Sharan R - Search Results

1

Effect of SARS-CoV-2 proteins on vascular permeability.

Rauti R, Shahoha M, Leichtmann-Bardoogo Y, Nasser R, Paz E, Tamir R, Miller V, Babich T, Shaked K, Ehrlich A, Ioannidis K, Nahmias Y, Sharan R, Ashery U, Maoz BM. Rauti R, et al. Among authors: sharan r. Elife. 2021 Oct 25;10:e69314. doi: 10.7554/eLife.69314. Elife. 2021. PMID: 34694226 Free PMC article.

2

Evolution of fibroblasts in the lung metastatic microenvironment is driven by stage-specific transcriptional plasticity.

Shani O, Raz Y, Monteran L, Scharff Y, Levi-Galibov O, Megides O, Shacham H, Cohen N, Silverbush D, Avivi C, Sharan R, Madi A, Scherz-Shouval R, Barshack I, Tsarfaty I, Erez N. Shani O, et al. Among authors: sharan r. Elife. 2021 Jun 25;10:e60745. doi: 10.7554/eLife.60745. Elife. 2021. PMID: 34169837 Free PMC article.

3

Deep Unfolding for Non-Negative Matrix Factorization with Application to Mutational Signature Analysis.

Nasser R, Eldar YC, Sharan R. Nasser R, et al. Among authors: sharan r. J Comput Biol. 2022 Jan;29(1):45-55. doi: 10.1089/cmb.2021.0438. Epub 2022 Jan 5. J Comput Biol. 2022. PMID: 34986029

4

BERTwalk for integrating gene networks to predict gene- to pathway-level properties.

Nasser R, Sharan R. Nasser R, et al. Among authors: sharan r. Bioinform Adv. 2023 Jul 3;3(1):vbad086. doi: 10.1093/bioadv/vbad086. eCollection 2023. Bioinform Adv. 2023. PMID: 37448813 Free PMC article.

5

Modelling the yeast interactome.

Janjić V, Sharan R, Pržulj N. Janjić V, et al. Among authors: sharan r. Sci Rep. 2014 Mar 4;4:4273. doi: 10.1038/srep04273. Sci Rep. 2014. PMID: 24589662 Free PMC article.

6

An integer programming framework for inferring disease complexes from network data.

Mazza A, Klockmeier K, Wanker E, Sharan R. Mazza A, et al. Among authors: sharan r. Bioinformatics. 2016 Jun 15;32(12):i271-i277. doi: 10.1093/bioinformatics/btw263. Bioinformatics. 2016. PMID: 27307626 Free PMC article.

7

ANAT 3.0: a framework for elucidating functional protein subnetworks using graph-theoretic and machine learning approaches.

Signorini LF, Almozlino T, Sharan R. Signorini LF, et al. Among authors: sharan r. BMC Bioinformatics. 2021 Oct 27;22(1):526. doi: 10.1186/s12859-021-04449-1. BMC Bioinformatics. 2021. PMID: 34706638 Free PMC article.

8

Multi-task learning for predicting SARS-CoV-2 antibody escape.

Gross B, Sharan R. Gross B, et al. Among authors: sharan r. Front Genet. 2022 Aug 11;13:886649. doi: 10.3389/fgene.2022.886649. eCollection 2022. Front Genet. 2022. PMID: 36035121 Free PMC article.

9

Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks.

Magger O, Waldman YY, Ruppin E, Sharan R. Magger O, et al. Among authors: sharan r. PLoS Comput Biol. 2012;8(9):e1002690. doi: 10.1371/journal.pcbi.1002690. Epub 2012 Sep 27. PLoS Comput Biol. 2012. PMID: 23028288 Free PMC article.

10

The approximability of shortest path-based graph orientations of protein-protein interaction networks.

Blokh D, Segev D, Sharan R. Blokh D, et al. Among authors: sharan r. J Comput Biol. 2013 Dec;20(12):945-57. doi: 10.1089/cmb.2013.0064. Epub 2013 Sep 28. J Comput Biol. 2013. PMID: 24073924 Free PMC article.

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