Shapiro BA - Search Results

1

Functionally-interdependent shape-switching nanoparticles with controllable properties.

Halman JR, Satterwhite E, Roark B, Chandler M, Viard M, Ivanina A, Bindewald E, Kasprzak WK, Panigaj M, Bui MN, Lu JS, Miller J, Khisamutdinov EF, Shapiro BA, Dobrovolskaia MA, Afonin KA. Halman JR, et al. Among authors: shapiro ba. Nucleic Acids Res. 2017 Feb 28;45(4):2210-2220. doi: 10.1093/nar/gkx008. Nucleic Acids Res. 2017. PMID: 28108656 Free PMC article.

2

Detection of common motifs in RNA secondary structures.

Margalit H, Shapiro BA, Oppenheim AB, Maizel JV Jr. Margalit H, et al. Among authors: shapiro ba. Nucleic Acids Res. 1989 Jun 26;17(12):4829-45. doi: 10.1093/nar/17.12.4829. Nucleic Acids Res. 1989. PMID: 2473442 Free PMC article.

3

STRUCTURELAB: a heterogeneous bioinformatics system for RNA structure analysis.

Shapiro BA, Kasprzak W. Shapiro BA, et al. J Mol Graph. 1996 Aug;14(4):194-205, 222-4. doi: 10.1016/s0263-7855(96)00063-x. J Mol Graph. 1996. PMID: 9076633

4

Stem Trace: an interactive visual tool for comparative RNA structure analysis.

Kasprzak W, Shapiro B. Kasprzak W, et al. Bioinformatics. 1999 Jan;15(1):16-31. doi: 10.1093/bioinformatics/15.1.16. Bioinformatics. 1999. PMID: 10068689

5

RNA folding pathway functional intermediates: their prediction and analysis.

Shapiro BA, Bengali D, Kasprzak W, Wu JC. Shapiro BA, et al. J Mol Biol. 2001 Sep 7;312(1):27-44. doi: 10.1006/jmbi.2001.4931. J Mol Biol. 2001. PMID: 11545583

6

Prediction of DNA single-strand conformation polymorphism: analysis by capillary electrophoresis and computerized DNA modeling.

Atha DH, Kasprzak W, O'Connell CD, Shapiro BA. Atha DH, et al. Among authors: shapiro ba. Nucleic Acids Res. 2001 Nov 15;29(22):4643-53. doi: 10.1093/nar/29.22.4643. Nucleic Acids Res. 2001. PMID: 11713314 Free PMC article.

7

Structural differentiation of the HIV-1 polyA signals.

Gee AH, Kasprzak W, Shapiro BA. Gee AH, et al. Among authors: shapiro ba. J Biomol Struct Dyn. 2006 Feb;23(4):417-28. doi: 10.1080/07391102.2006.10531236. J Biomol Struct Dyn. 2006. PMID: 16363877

8

Structural polymorphism of the HIV-1 leader region explored by computational methods.

Kasprzak W, Bindewald E, Shapiro BA. Kasprzak W, et al. Among authors: shapiro ba. Nucleic Acids Res. 2005 Dec 20;33(22):7151-63. doi: 10.1093/nar/gki1015. Print 2005. Nucleic Acids Res. 2005. PMID: 16371347 Free PMC article.

9

RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.

Bindewald E, Shapiro BA. Bindewald E, et al. Among authors: shapiro ba. RNA. 2006 Mar;12(3):342-52. doi: 10.1261/rna.2164906. RNA. 2006. PMID: 16495232 Free PMC article.

10

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm.

Shapiro BA, Kasprzak W, Grunewald C, Aman J. Shapiro BA, et al. J Mol Graph Model. 2006 Dec;25(4):514-31. doi: 10.1016/j.jmgm.2006.04.004. Epub 2006 Apr 28. J Mol Graph Model. 2006. PMID: 16725358

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