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SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids.
Garcia AA, Mollinari M, Marconi TG, Serang OR, Silva RR, Vieira ML, Vicentini R, Costa EA, Mancini MC, Garcia MO, Pastina MM, Gazaffi R, Martins ER, Dahmer N, Sforça DA, Silva CB, Bundock P, Henry RJ, Souza GM, van Sluys MA, Landell MG, Carneiro MS, Vincentz MA, Pinto LR, Vencovsky R, Souza AP. Garcia AA, et al. Among authors: sforca da. Sci Rep. 2013 Dec 2;3:3399. doi: 10.1038/srep03399. Sci Rep. 2013. PMID: 24292365 Free PMC article.
Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum.
Vilela MM, Del Bem LE, Van Sluys MA, de Setta N, Kitajima JP, Cruz GM, Sforça DA, de Souza AP, Ferreira PC, Grativol C, Cardoso-Silva CB, Vicentini R, Vincentz M. Vilela MM, et al. Among authors: sforca da. Genome Biol Evol. 2017 Feb 1;9(2):266-278. doi: 10.1093/gbe/evw293. Genome Biol Evol. 2017. PMID: 28082603 Free PMC article.
Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions.
Sforça DA, Vautrin S, Cardoso-Silva CB, Mancini MC, Romero-da Cruz MV, Pereira GDS, Conte M, Bellec A, Dahmer N, Fourment J, Rodde N, Van Sluys MA, Vicentini R, Garcia AAF, Forni-Martins ER, Carneiro MS, Hoffmann HP, Pinto LR, Landell MGA, Vincentz M, Berges H, de Souza AP. Sforça DA, et al. Front Plant Sci. 2019 May 7;10:553. doi: 10.3389/fpls.2019.00553. eCollection 2019. Front Plant Sci. 2019. PMID: 31134109 Free PMC article.
The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns.
Aono AH, Pimenta RJG, Garcia ALB, Correr FH, Hosaka GK, Carrasco MM, Cardoso-Silva CB, Mancini MC, Sforça DA, Dos Santos LB, Nagai JS, Pinto LR, Landell MGA, Carneiro MS, Balsalobre TW, Quiles MG, Pereira WA, Margarido GRA, de Souza AP. Aono AH, et al. Among authors: sforca da. Front Plant Sci. 2021 Jul 7;12:668623. doi: 10.3389/fpls.2021.668623. eCollection 2021. Front Plant Sci. 2021. PMID: 34305969 Free PMC article.
Polyploid SNP Genotyping Using the MassARRAY System.
da Costa Lima Moraes A, Sforça DA, Mancini MC, Vigna BBZ, de Souza AP. da Costa Lima Moraes A, et al. Among authors: sforca da. Methods Mol Biol. 2023;2638:93-113. doi: 10.1007/978-1-0716-3024-2_7. Methods Mol Biol. 2023. PMID: 36781637
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