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High-Quality Draft Genome Sequence Resources of Eight Xylella fastidiosa Strains Isolated from Citrus, Coffee, Plum, and Hibiscus in South America.
Pierry PM, de Santana WO, Kitajima JP, Martins-Junior J, Zaini PA, Uceda-Campos G, Feitosa-Junior OR, Pessoa PIS, Coletta-Filho HD, de Souza AA, Machado MA, Gesteira ADS, Martins LF, Amaral MS, Beckedorff FC, de Almeida LGP, de Vasconcelos ATR, Verjovski-Almeida S, Setubal JC, da Silva AM. Pierry PM, et al. Among authors: setubal jc. Phytopathology. 2020 Nov;110(11):1751-1755. doi: 10.1094/PHYTO-05-20-0162-A. Epub 2020 Sep 10. Phytopathology. 2020. PMID: 32520631 Free article.
The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis.
Simpson AJ, Reinach FC, Arruda P, Abreu FA, Acencio M, Alvarenga R, Alves LM, Araya JE, Baia GS, Baptista CS, Barros MH, Bonaccorsi ED, Bordin S, Bové JM, Briones MR, Bueno MR, Camargo AA, Camargo LE, Carraro DM, Carrer H, Colauto NB, Colombo C, Costa FF, Costa MC, Costa-Neto CM, Coutinho LL, Cristofani M, Dias-Neto E, Docena C, El-Dorry H, Facincani AP, Ferreira AJ, Ferreira VC, Ferro JA, Fraga JS, França SC, Franco MC, Frohme M, Furlan LR, Garnier M, Goldman GH, Goldman MH, Gomes SL, Gruber A, Ho PL, Hoheisel JD, Junqueira ML, Kemper EL, Kitajima JP, Krieger JE, Kuramae EE, Laigret F, Lambais MR, Leite LC, Lemos EG, Lemos MV, Lopes SA, Lopes CR, Machado JA, Machado MA, Madeira AM, Madeira HM, Marino CL, Marques MV, Martins EA, Martins EM, Matsukuma AY, Menck CF, Miracca EC, Miyaki CY, Monteriro-Vitorello CB, Moon DH, Nagai MA, Nascimento AL, Netto LE, Nhani A Jr, Nobrega FG, Nunes LR, Oliveira MA, de Oliveira MC, de Oliveira RC, Palmieri DA, Paris A, Peixoto BR, Pereira GA, Pereira HA Jr, Pesquero JB, Quaggio RB, Roberto PG, Rodrigues V, de M Rosa AJ, de Rosa VE Jr, de Sá RG, Santelli RV, Sawasaki HE, da Silva AC, da Silva AM, da Silva FR, da Silva WA Jr, da Silveira JF, Silvest… See abstract for full author list ➔ Simpson AJ, et al. Among authors: setubal jc. Nature. 2000 Jul 13;406(6792):151-9. doi: 10.1038/35018003. Nature. 2000. PMID: 10910347
Comparative genomic analysis of plant-associated bacteria.
Van Sluys MA, Monteiro-Vitorello CB, Camargo LE, Menck CF, Da Silva AC, Ferro JA, Oliveira MC, Setubal JC, Kitajima JP, Simpson AJ. Van Sluys MA, et al. Among authors: setubal jc. Annu Rev Phytopathol. 2002;40:169-89. doi: 10.1146/annurev.phyto.40.030402.090559. Epub 2002 May 13. Annu Rev Phytopathol. 2002. PMID: 12147758 Review.
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa.
Van Sluys MA, de Oliveira MC, Monteiro-Vitorello CB, Miyaki CY, Furlan LR, Camargo LE, da Silva AC, Moon DH, Takita MA, Lemos EG, Machado MA, Ferro MI, da Silva FR, Goldman MH, Goldman GH, Lemos MV, El-Dorry H, Tsai SM, Carrer H, Carraro DM, de Oliveira RC, Nunes LR, Siqueira WJ, Coutinho LL, Kimura ET, Ferro ES, Harakava R, Kuramae EE, Marino CL, Giglioti E, Abreu IL, Alves LM, do Amaral AM, Baia GS, Blanco SR, Brito MS, Cannavan FS, Celestino AV, da Cunha AF, Fenille RC, Ferro JA, Formighieri EF, Kishi LT, Leoni SG, Oliveira AR, Rosa VE Jr, Sassaki FT, Sena JA, de Souza AA, Truffi D, Tsukumo F, Yanai GM, Zaros LG, Civerolo EL, Simpson AJ, Almeida NF Jr, Setubal JC, Kitajima JP. Van Sluys MA, et al. Among authors: setubal jc. J Bacteriol. 2003 Feb;185(3):1018-26. doi: 10.1128/JB.185.3.1018-1026.2003. J Bacteriol. 2003. PMID: 12533478 Free PMC article.
Comparative genomics analyses of citrus-associated bacteria.
Moreira LM, de Souza RF, Almeida NF Jr, Setubal JC, Oliveira JC, Furlan LR, Ferro JA, da Silva AC. Moreira LM, et al. Among authors: setubal jc. Annu Rev Phytopathol. 2004;42:163-84. doi: 10.1146/annurev.phyto.42.040803.140310. Annu Rev Phytopathol. 2004. PMID: 15283664 Review.
Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms.
Martins LF, Antunes LP, Pascon RC, de Oliveira JC, Digiampietri LA, Barbosa D, Peixoto BM, Vallim MA, Viana-Niero C, Ostroski EH, Telles GP, Dias Z, da Cruz JB, Juliano L, Verjovski-Almeida S, da Silva AM, Setubal JC. Martins LF, et al. Among authors: setubal jc. PLoS One. 2013 Apr 24;8(4):e61928. doi: 10.1371/journal.pone.0061928. Print 2013. PLoS One. 2013. PMID: 23637931 Free PMC article.
Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq.
Anderson L, Amaral MS, Beckedorff F, Silva LF, Dazzani B, Oliveira KC, Almeida GT, Gomes MR, Pires DS, Setubal JC, DeMarco R, Verjovski-Almeida S. Anderson L, et al. Among authors: setubal jc. PLoS Negl Trop Dis. 2015 Dec 31;9(12):e0004334. doi: 10.1371/journal.pntd.0004334. eCollection 2015 Dec. PLoS Negl Trop Dis. 2015. PMID: 26719891 Free PMC article.
Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U.
Lima-Junior JD, Viana-Niero C, Conde Oliveira DV, Machado GE, Rabello MC, Martins-Junior J, Martins LF, Digiampietri LA, da Silva AM, Setubal JC, Russell DA, Jacobs-Sera D, Pope WH, Hatfull GF, Leão SC. Lima-Junior JD, et al. Among authors: setubal jc. BMC Microbiol. 2016 Jun 17;16(1):111. doi: 10.1186/s12866-016-0734-3. BMC Microbiol. 2016. PMID: 27316672 Free PMC article.
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics.
Antunes LP, Martins LF, Pereira RV, Thomas AM, Barbosa D, Lemos LN, Silva GM, Moura LM, Epamino GW, Digiampietri LA, Lombardi KC, Ramos PL, Quaggio RB, de Oliveira JC, Pascon RC, Cruz JB, da Silva AM, Setubal JC. Antunes LP, et al. Among authors: setubal jc. Sci Rep. 2016 Dec 12;6:38915. doi: 10.1038/srep38915. Sci Rep. 2016. PMID: 27941956 Free PMC article.
163 results