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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass.
Benocci T, Aguilar-Pontes MV, Kun RS, Lubbers RJM, Lail K, Wang M, Lipzen A, Ng V, Grigoriev IV, Seiboth B, Daly P, de Vries RP. Benocci T, et al. Among authors: seiboth b. Biotechnol Biofuels. 2019 Apr 9;12:81. doi: 10.1186/s13068-019-1422-y. eCollection 2019. Biotechnol Biofuels. 2019. PMID: 31007715 Free PMC article.
D-Galactose uptake is nonfunctional in the conidiospores of Aspergillus niger.
Fekete E, de Vries RP, Seiboth B, vanKuyk PA, Sándor E, Fekete E, Metz B, Kubicek CP, Karaffa L. Fekete E, et al. Among authors: seiboth b. FEMS Microbiol Lett. 2012 Apr;329(2):198-203. doi: 10.1111/j.1574-6968.2012.02524.x. Epub 2012 Feb 28. FEMS Microbiol Lett. 2012. PMID: 22324294
Regulators of plant biomass degradation in ascomycetous fungi.
Benocci T, Aguilar-Pontes MV, Zhou M, Seiboth B, de Vries RP. Benocci T, et al. Among authors: seiboth b. Biotechnol Biofuels. 2017 Jun 12;10:152. doi: 10.1186/s13068-017-0841-x. eCollection 2017. Biotechnol Biofuels. 2017. PMID: 28616076 Free PMC article. Review.
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepčić K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH… See abstract for full author list ➔ de Vries RP, et al. Among authors: seiboth b. Genome Biol. 2017 Feb 14;18(1):28. doi: 10.1186/s13059-017-1151-0. Genome Biol. 2017. PMID: 28196534 Free PMC article.
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