Segrè D - Search Results

1

A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS).

Dukovski I, Bajić D, Chacón JM, Quintin M, Vila JCC, Sulheim S, Pacheco AR, Bernstein DB, Riehl WJ, Korolev KS, Sanchez A, Harcombe WR, Segrè D. Dukovski I, et al. Among authors: segre d. Nat Protoc. 2021 Nov;16(11):5030-5082. doi: 10.1038/s41596-021-00593-3. Epub 2021 Oct 11. Nat Protoc. 2021. PMID: 34635859 Free PMC article. Review.

2

Optimal metabolic regulation using a constraint-based model.

Riehl WJ, Segrè D. Riehl WJ, et al. Among authors: segre d. Genome Inform. 2008;20:159-70. doi: 10.1142/9781848163003_0014. Genome Inform. 2008. PMID: 19425131 Free PMC article.

3

Signatures of arithmetic simplicity in metabolic network architecture.

Riehl WJ, Krapivsky PL, Redner S, Segrè D. Riehl WJ, et al. Among authors: segre d. PLoS Comput Biol. 2010 Apr 1;6(4):e1000725. doi: 10.1371/journal.pcbi.1000725. PLoS Comput Biol. 2010. PMID: 20369010 Free PMC article.

4

Environments that induce synthetic microbial ecosystems.

Klitgord N, Segrè D. Klitgord N, et al. Among authors: segre d. PLoS Comput Biol. 2010 Nov 18;6(11):e1001002. doi: 10.1371/journal.pcbi.1001002. PLoS Comput Biol. 2010. PMID: 21124952 Free PMC article.

5

Ecosystems biology of microbial metabolism.

Klitgord N, Segrè D. Klitgord N, et al. Among authors: segre d. Curr Opin Biotechnol. 2011 Aug;22(4):541-6. doi: 10.1016/j.copbio.2011.04.018. Epub 2011 May 16. Curr Opin Biotechnol. 2011. PMID: 21592777 Review.

6

Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics.

Harcombe WR, Riehl WJ, Dukovski I, Granger BR, Betts A, Lang AH, Bonilla G, Kar A, Leiby N, Mehta P, Marx CJ, Segrè D. Harcombe WR, et al. Among authors: segre d. Cell Rep. 2014 May 22;7(4):1104-15. doi: 10.1016/j.celrep.2014.03.070. Epub 2014 May 1. Cell Rep. 2014. PMID: 24794435 Free PMC article.

7

Species interactions differ in their genetic robustness.

Chubiz LM, Granger BR, Segrè D, Harcombe WR. Chubiz LM, et al. Among authors: segre d. Front Microbiol. 2015 Apr 14;6:271. doi: 10.3389/fmicb.2015.00271. eCollection 2015. Front Microbiol. 2015. PMID: 25926820 Free PMC article.

8

Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.

Granger BR, Chang YC, Wang Y, DeLisi C, Segrè D, Hu Z. Granger BR, et al. Among authors: segre d. PLoS Comput Biol. 2016 Apr 15;12(4):e1004875. doi: 10.1371/journal.pcbi.1004875. eCollection 2016 Apr. PLoS Comput Biol. 2016. PMID: 27081850 Free PMC article.

9

Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities.

Zomorrodi AR, Segrè D. Zomorrodi AR, et al. Among authors: segre d. Nat Commun. 2017 Nov 16;8(1):1563. doi: 10.1038/s41467-017-01407-5. Nat Commun. 2017. PMID: 29146901 Free PMC article.

10

Emergent simplicity in microbial community assembly.

Goldford JE, Lu N, Bajić D, Estrela S, Tikhonov M, Sanchez-Gorostiaga A, Segrè D, Mehta P, Sanchez A. Goldford JE, et al. Among authors: segre d. Science. 2018 Aug 3;361(6401):469-474. doi: 10.1126/science.aat1168. Science. 2018. PMID: 30072533 Free PMC article.

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