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Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Among authors: segata n. Nat Med. 2019 Apr;25(4):667-678. doi: 10.1038/s41591-019-0405-7. Epub 2019 Apr 1. Nat Med. 2019. PMID: 30936548 Free PMC article.
Metagenomic biomarker discovery and explanation.
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C. Segata N, et al. Genome Biol. 2011 Jun 24;12(6):R60. doi: 10.1186/gb-2011-12-6-r60. Genome Biol. 2011. PMID: 21702898 Free PMC article.
Expression profiling of archival tumors for long-term health studies.
Waldron L, Ogino S, Hoshida Y, Shima K, McCart Reed AE, Simpson PT, Baba Y, Nosho K, Segata N, Vargas AC, Cummings MC, Lakhani SR, Kirkner GJ, Giovannucci E, Quackenbush J, Golub TR, Fuchs CS, Parmigiani G, Huttenhower C. Waldron L, et al. Among authors: segata n. Clin Cancer Res. 2012 Nov 15;18(22):6136-46. doi: 10.1158/1078-0432.CCR-12-1915. Epub 2012 Nov 7. Clin Cancer Res. 2012. PMID: 23136189 Free PMC article.
Two-stage microbial community experimental design.
Tickle TL, Segata N, Waldron L, Weingart U, Huttenhower C. Tickle TL, et al. Among authors: segata n. ISME J. 2013 Dec;7(12):2330-9. doi: 10.1038/ismej.2013.139. Epub 2013 Aug 15. ISME J. 2013. PMID: 23949665 Free PMC article.
MetaPhlAn2 for enhanced metagenomic taxonomic profiling.
Truong DT, Franzosa EA, Tickle TL, Scholz M, Weingart G, Pasolli E, Tett A, Huttenhower C, Segata N. Truong DT, et al. Among authors: segata n. Nat Methods. 2015 Oct;12(10):902-3. doi: 10.1038/nmeth.3589. Nat Methods. 2015. PMID: 26418763 No abstract available.
210 results