Schwartz R - Search Results

1

Inferring models of multiscale copy number evolution for single-tumor phylogenetics.

Chowdhury SA, Gertz EM, Wangsa D, Heselmeyer-Haddad K, Ried T, Schäffer AA, Schwartz R. Chowdhury SA, et al. Among authors: schwartz r. Bioinformatics. 2015 Jun 15;31(12):i258-67. doi: 10.1093/bioinformatics/btv233. Bioinformatics. 2015. PMID: 26072490 Free PMC article.

2

Haplotype parsing: methods for extracting information from human genetic variations.

Schwartz R. Schwartz R. Appl Bioinformatics. 2004;3(2-3):181-91. doi: 10.2165/00822942-200403020-00012. Appl Bioinformatics. 2004. PMID: 15693743

3

Reconstructing tumor phylogenies from heterogeneous single-cell data.

Pennington G, Smith CA, Shackney S, Schwartz R. Pennington G, et al. Among authors: schwartz r. J Bioinform Comput Biol. 2007 Apr;5(2a):407-27. doi: 10.1142/s021972000700259x. J Bioinform Comput Biol. 2007. PMID: 17589968

4

Direct maximum parsimony phylogeny reconstruction from genotype data.

Sridhar S, Lam F, Blelloch GE, Ravi R, Schwartz R. Sridhar S, et al. Among authors: schwartz r. BMC Bioinformatics. 2007 Dec 5;8:472. doi: 10.1186/1471-2105-8-472. BMC Bioinformatics. 2007. PMID: 18053244 Free PMC article.

5

Network-based inference of cancer progression from microarray data.

Park Y, Shackney S, Schwartz R. Park Y, et al. Among authors: schwartz r. IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun;6(2):200-12. doi: 10.1109/TCBB.2008.126. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19407345

6

Applying unmixing to gene expression data for tumor phylogeny inference.

Schwartz R, Shackney SE. Schwartz R, et al. BMC Bioinformatics. 2010 Jan 20;11:42. doi: 10.1186/1471-2105-11-42. BMC Bioinformatics. 2010. PMID: 20089185 Free PMC article.

7

Robust unmixing of tumor states in array comparative genomic hybridization data.

Tolliver D, Tsourakakis C, Subramanian A, Shackney S, Schwartz R. Tolliver D, et al. Among authors: schwartz r. Bioinformatics. 2010 Jun 15;26(12):i106-14. doi: 10.1093/bioinformatics/btq213. Bioinformatics. 2010. PMID: 20529894 Free PMC article.

8

Inference of tumor phylogenies from genomic assays on heterogeneous samples.

Subramanian A, Shackney S, Schwartz R. Subramanian A, et al. Among authors: schwartz r. J Biomed Biotechnol. 2012;2012:797812. doi: 10.1155/2012/797812. Epub 2012 May 13. J Biomed Biotechnol. 2012. PMID: 22654484 Free PMC article.

9

Single-cell genetic analysis of ductal carcinoma in situ and invasive breast cancer reveals enormous tumor heterogeneity yet conserved genomic imbalances and gain of MYC during progression.

Heselmeyer-Haddad K, Berroa Garcia LY, Bradley A, Ortiz-Melendez C, Lee WJ, Christensen R, Prindiville SA, Calzone KA, Soballe PW, Hu Y, Chowdhury SA, Schwartz R, Schäffer AA, Ried T. Heselmeyer-Haddad K, et al. Among authors: schwartz r. Am J Pathol. 2012 Nov;181(5):1807-22. doi: 10.1016/j.ajpath.2012.07.012. Epub 2012 Oct 8. Am J Pathol. 2012. PMID: 23062488 Free PMC article.

10

Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations.

Chowdhury SA, Shackney SE, Heselmeyer-Haddad K, Ried T, Schäffer AA, Schwartz R. Chowdhury SA, et al. Among authors: schwartz r. Bioinformatics. 2013 Jul 1;29(13):i189-98. doi: 10.1093/bioinformatics/btt205. Bioinformatics. 2013. PMID: 23812984 Free PMC article.

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