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Pathway Commons at virtual cell: use of pathway data for mathematical modeling.
Blinov ML, Schaff JC, Ruebenacker O, Wei X, Vasilescu D, Gao F, Morgan F, Ye L, Lakshminarayana A, Moraru II, Loew LM. Blinov ML, et al. Bioinformatics. 2014 Jan 15;30(2):292-4. doi: 10.1093/bioinformatics/btt660. Epub 2013 Nov 22. Bioinformatics. 2014. PMID: 24273241 Free PMC article.
Rule-based modeling with Virtual Cell.
Schaff JC, Vasilescu D, Moraru II, Loew LM, Blinov ML. Schaff JC, et al. Bioinformatics. 2016 Sep 15;32(18):2880-2. doi: 10.1093/bioinformatics/btw353. Epub 2016 Jun 9. Bioinformatics. 2016. PMID: 27497444 Free PMC article.
The virtual cell.
Schaff J, Loew LM. Schaff J, et al. Pac Symp Biocomput. 1999:228-39. doi: 10.1142/9789814447300_0023. Pac Symp Biocomput. 1999. PMID: 10380200 Free article.
Quantitative cell biology with the Virtual Cell.
Slepchenko BM, Schaff JC, Macara I, Loew LM. Slepchenko BM, et al. Trends Cell Biol. 2003 Nov;13(11):570-6. doi: 10.1016/j.tcb.2003.09.002. Trends Cell Biol. 2003. PMID: 14573350 Review.
Virtual Cell modelling and simulation software environment.
Moraru II, Schaff JC, Slepchenko BM, Blinov ML, Morgan F, Lakshminarayana A, Gao F, Li Y, Loew LM. Moraru II, et al. Among authors: schaff jc. IET Syst Biol. 2008 Sep;2(5):352-62. doi: 10.1049/iet-syb:20080102. IET Syst Biol. 2008. PMID: 19045830 Free PMC article.
Kinetic Modeling using BioPAX ontology.
Ruebenacker O, Moraru II, Schaff JC, Blinov ML. Ruebenacker O, et al. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2007 Nov 2;2007:339-348. doi: 10.1109/BIBM.2007.55. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2007. PMID: 20862270 Free PMC article.
Integrating BioPAX pathway knowledge with SBML models.
Ruebenacker O, Moraru II, Schaff JC, Blinov ML. Ruebenacker O, et al. Among authors: schaff jc. IET Syst Biol. 2009 Sep;3(5):317-28. doi: 10.1049/iet-syb.2009.0007. IET Syst Biol. 2009. PMID: 21028923 Free article.
Virtual Cell: computational tools for modeling in cell biology.
Resasco DC, Gao F, Morgan F, Novak IL, Schaff JC, Slepchenko BM. Resasco DC, et al. Wiley Interdiscip Rev Syst Biol Med. 2012 Mar-Apr;4(2):129-40. doi: 10.1002/wsbm.165. Epub 2011 Dec 2. Wiley Interdiscip Rev Syst Biol Med. 2012. PMID: 22139996 Free PMC article. Review.
122 results