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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Gordon SP, Contreras-Moreira B, Woods DP, Des Marais DL, Burgess D, Shu S, Stritt C, Roulin AC, Schackwitz W, Tyler L, Martin J, Lipzen A, Dochy N, Phillips J, Barry K, Geuten K, Budak H, Juenger TE, Amasino R, Caicedo AL, Goodstein D, Davidson P, Mur LAJ, Figueroa M, Freeling M, Catalan P, Vogel JP. Gordon SP, et al. Among authors: schackwitz w. Nat Commun. 2017 Dec 19;8(1):2184. doi: 10.1038/s41467-017-02292-8. Nat Commun. 2017. PMID: 29259172 Free PMC article.
Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.
Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, Budak H, Tuna M, Mitchell-Olds T, Pfender WF, Juenger TE, Mockler TC, Vogel JP. Gordon SP, et al. Among authors: schackwitz w. Plant J. 2014 Aug;79(3):361-74. doi: 10.1111/tpj.12569. Epub 2014 Jul 15. Plant J. 2014. PMID: 24888695 Free article.
Genomic Sequence Variation Analysis by Resequencing.
Martin J, Schackwitz W, Lipzen A. Martin J, et al. Among authors: schackwitz w. Methods Mol Biol. 2018;1775:229-239. doi: 10.1007/978-1-4939-7804-5_18. Methods Mol Biol. 2018. PMID: 29876821
Genome sequence of the model rice variety KitaakeX.
Jain R, Jenkins J, Shu S, Chern M, Martin JA, Copetti D, Duong PQ, Pham NT, Kudrna DA, Talag J, Schackwitz WS, Lipzen AM, Dilworth D, Bauer D, Grimwood J, Nelson CR, Xing F, Xie W, Barry KW, Wing RA, Schmutz J, Li G, Ronald PC. Jain R, et al. Among authors: schackwitz ws. BMC Genomics. 2019 Nov 27;20(1):905. doi: 10.1186/s12864-019-6262-4. BMC Genomics. 2019. PMID: 31775618 Free PMC article.
Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants.
Álvarez-Escribano I, Sasse C, Bok JW, Na H, Amirebrahimi M, Lipzen A, Schackwitz W, Martin J, Barry K, Gutiérrez G, Cea-Sánchez S, Marcos AT, Grigoriev IV, Keller NP, Braus GH, Cánovas D. Álvarez-Escribano I, et al. Among authors: schackwitz w. BMC Biol. 2019 Nov 11;17(1):88. doi: 10.1186/s12915-019-0702-0. BMC Biol. 2019. PMID: 31711484 Free PMC article.
59 results