Santella A - Search Results

1

WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration.

Santella A, Catena R, Kovacevic I, Shah P, Yu Z, Marquina-Solis J, Kumar A, Wu Y, Schaff J, Colón-Ramos D, Shroff H, Mohler WA, Bao Z. Santella A, et al. BMC Bioinformatics. 2015 Jun 9;16(1):189. doi: 10.1186/s12859-015-0627-8. BMC Bioinformatics. 2015. PMID: 26051157 Free PMC article.

2

A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D.

Santella A, Du Z, Nowotschin S, Hadjantonakis AK, Bao Z. Santella A, et al. BMC Bioinformatics. 2010 Nov 29;11:580. doi: 10.1186/1471-2105-11-580. BMC Bioinformatics. 2010. PMID: 21114815 Free PMC article.

3

A semi-local neighborhood-based framework for probabilistic cell lineage tracing.

Santella A, Du Z, Bao Z. Santella A, et al. BMC Bioinformatics. 2014 Jun 25;15:217. doi: 10.1186/1471-2105-15-217. BMC Bioinformatics. 2014. PMID: 24964866 Free PMC article.

4

Untwisting the Caenorhabditis elegans embryo.

Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colón-Ramos DA, Bao Z, Shroff H. Christensen RP, et al. Among authors: santella a. Elife. 2015 Dec 3;4:e10070. doi: 10.7554/eLife.10070. Elife. 2015. PMID: 26633880 Free PMC article.

5

AceTree: a major update and case study in the long term maintenance of open-source scientific software.

Katzman B, Tang D, Santella A, Bao Z. Katzman B, et al. Among authors: santella a. BMC Bioinformatics. 2018 Apr 4;19(1):121. doi: 10.1186/s12859-018-2127-0. BMC Bioinformatics. 2018. PMID: 29618316 Free PMC article.

6

Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution.

Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA. Duncan LH, et al. Among authors: santella a. J Vis Exp. 2019 Jun 6;(148):10.3791/59533. doi: 10.3791/59533. J Vis Exp. 2019. PMID: 31233035 Free PMC article.

7

Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans.

Wu Y, Ghitani A, Christensen R, Santella A, Du Z, Rondeau G, Bao Z, Colón-Ramos D, Shroff H. Wu Y, et al. Among authors: santella a. Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17708-13. doi: 10.1073/pnas.1108494108. Epub 2011 Oct 17. Proc Natl Acad Sci U S A. 2011. PMID: 22006307 Free PMC article.

8

Actomyosin-based self-organization of cell internalization during C. elegans gastrulation.

Pohl C, Tiongson M, Moore JL, Santella A, Bao Z. Pohl C, et al. Among authors: santella a. BMC Biol. 2012 Nov 30;10:94. doi: 10.1186/1741-7007-10-94. BMC Biol. 2012. PMID: 23198792 Free PMC article.

9

Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Wu Y, Wawrzusin P, Senseney J, Fischer RS, Christensen R, Santella A, York AG, Winter PW, Waterman CM, Bao Z, Colón-Ramos DA, McAuliffe M, Shroff H. Wu Y, et al. Among authors: santella a. Nat Biotechnol. 2013 Nov;31(11):1032-8. doi: 10.1038/nbt.2713. Epub 2013 Oct 13. Nat Biotechnol. 2013. PMID: 24108093 Free PMC article.

10

De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis.

Du Z, Santella A, He F, Tiongson M, Bao Z. Du Z, et al. Among authors: santella a. Cell. 2014 Jan 16;156(1-2):359-72. doi: 10.1016/j.cell.2013.11.046. Cell. 2014. PMID: 24439388 Free PMC article.

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