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Mapping the Melanoma Plasma Proteome (MPP) Using Single-Shot Proteomics Interfaced with the WiMT Database.
Almeida N, Rodriguez J, Pla Parada I, Perez-Riverol Y, Woldmar N, Kim Y, Oskolas H, Betancourt L, Valdés JG, Sahlin KB, Pizzatti L, Szasz AM, Kárpáti S, Appelqvist R, Malm J, B Domont G, C S Nogueira F, Marko-Varga G, Sanchez A. Almeida N, et al. Among authors: sanchez a. Cancers (Basel). 2021 Dec 10;13(24):6224. doi: 10.3390/cancers13246224. Cancers (Basel). 2021. PMID: 34944842 Free PMC article.
Proteomics based on peptide fractionation by SDS-free PAGE.
Ramos Y, Gutierrez E, Machado Y, Sánchez A, Castellanos-Serra L, González LJ, Fernández-de-Cossio J, Pérez-Riverol Y, Betancourt L, Gil J, Padrón G, Besada V. Ramos Y, et al. Among authors: sanchez a. J Proteome Res. 2008 Jun;7(6):2427-34. doi: 10.1021/pr700840y. Epub 2008 Apr 15. J Proteome Res. 2008. PMID: 18422305
Evaluation of phenylthiocarbamoyl-derivatized peptides by electrospray ionization mass spectrometry: selective isolation and analysis of modified multiply charged peptides for liquid chromatography-tandem mass spectrometry experiments.
Sanchez A, Perez-Riverol Y, González LJ, Noda J, Betancourt L, Ramos Y, Gil J, Vera R, Padrón G, Besada V. Sanchez A, et al. Anal Chem. 2010 Oct 15;82(20):8492-501. doi: 10.1021/ac1012738. Anal Chem. 2010. PMID: 20853852
Introducing an Asp-Pro linker in the synthesis of random one-bead-one-compound hexapeptide libraries compatible with ESI-MS analysis.
Masforrol Y, Gil J, González LJ, Pérez-Riverol Y, Fernández-de-Cossío J, Sánchez A, Betancourt LH, Garay HE, Cabrales A, Albericio F, Yang H, Zubarev RA, Besada V, Acosta OR. Masforrol Y, et al. Among authors: sanchez a. ACS Comb Sci. 2012 Mar 12;14(3):145-9. doi: 10.1021/co200159r. Epub 2012 Feb 28. ACS Comb Sci. 2012. PMID: 22280455
Isoelectric point optimization using peptide descriptors and support vector machines.
Perez-Riverol Y, Audain E, Millan A, Ramos Y, Sanchez A, Vizcaíno JA, Wang R, Müller M, Machado YJ, Betancourt LH, González LJ, Padrón G, Besada V. Perez-Riverol Y, et al. Among authors: sanchez a. J Proteomics. 2012 Apr 3;75(7):2269-74. doi: 10.1016/j.jprot.2012.01.029. Epub 2012 Feb 3. J Proteomics. 2012. PMID: 22326964
Effectively addressing complex proteomic search spaces with peptide spectrum matching.
Borges D, Perez-Riverol Y, Nogueira FC, Domont GB, Noda J, da Veiga Leprevost F, Besada V, França FM, Barbosa VC, Sánchez A, Carvalho PC. Borges D, et al. Among authors: sanchez a. Bioinformatics. 2013 May 15;29(10):1343-4. doi: 10.1093/bioinformatics/btt106. Epub 2013 Feb 27. Bioinformatics. 2013. PMID: 23446294
HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions.
Perez-Riverol Y, Sánchez A, Noda J, Borges D, Carvalho PC, Wang R, Vizcaíno JA, Betancourt L, Ramos Y, Duarte G, Nogueira FC, González LJ, Padrón G, Tabb DL, Hermjakob H, Domont GB, Besada V. Perez-Riverol Y, et al. Among authors: sanchez a. Anal Chem. 2013 Apr 2;85(7):3515-20. doi: 10.1021/ac303239g. Epub 2013 Mar 20. Anal Chem. 2013. PMID: 23448308
5,266 results