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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence.
Lopez-Maestre H, Brinza L, Marchet C, Kielbassa J, Bastien S, Boutigny M, Monnin D, Filali AE, Carareto CM, Vieira C, Picard F, Kremer N, Vavre F, Sagot MF, Lacroix V. Lopez-Maestre H, et al. Among authors: sagot mf. Nucleic Acids Res. 2016 Nov 2;44(19):e148. doi: 10.1093/nar/gkw655. Epub 2016 Jul 25. Nucleic Acids Res. 2016. PMID: 27458203 Free PMC article.
Modes and cuts in metabolic networks: complexity and algorithms.
Acuña V, Chierichetti F, Lacroix V, Marchetti-Spaccamela A, Sagot MF, Stougie L. Acuña V, et al. Among authors: sagot mf. Biosystems. 2009 Jan;95(1):51-60. doi: 10.1016/j.biosystems.2008.06.015. Epub 2008 Aug 3. Biosystems. 2009. PMID: 18722501 Review.
Cassis: detection of genomic rearrangement breakpoints.
Baudet C, Lemaitre C, Dias Z, Gautier C, Tannier E, Sagot MF. Baudet C, et al. Among authors: sagot mf. Bioinformatics. 2010 Aug 1;26(15):1897-8. doi: 10.1093/bioinformatics/btq301. Epub 2010 Jun 23. Bioinformatics. 2010. PMID: 20576622 Free PMC article.
Efficient hybrid de novo assembly of human genomes with WENGAN.
Di Genova A, Buena-Atienza E, Ossowski S, Sagot MF. Di Genova A, et al. Among authors: sagot mf. Nat Biotechnol. 2021 Apr;39(4):422-430. doi: 10.1038/s41587-020-00747-w. Epub 2020 Dec 14. Nat Biotechnol. 2021. PMID: 33318652 Free PMC article.
MOOMIN - Mathematical explOration of 'Omics data on a MetabolIc Network.
Pusa T, Ferrarini MG, Andrade R, Mary A, Marchetti-Spaccamela A, Stougie L, Sagot MF. Pusa T, et al. Among authors: sagot mf. Bioinformatics. 2020 Jan 15;36(2):514-523. doi: 10.1093/bioinformatics/btz584. Bioinformatics. 2020. PMID: 31504164 Free PMC article.
89 results