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A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan Africa.
Nat Commun. 2023 Oct 23;14(1):6392. doi: 10.1038/s41467-023-41152-6.
Nat Commun. 2023.
PMID: 37872141
Free PMC article.
Review.
Salmonella Typhi whole genome sequencing in Rwanda shows a diverse historical population with recent introduction of haplotype H58.
Rutanga JP, de Block T, Cuypers WL, Cafmeyer J, Peeters M, Umumararungu E, Ngabonziza JCS, Rucogoza A, Vandenberg O, Martiny D, Dusabe A, Nkubana T, Dougan G, Muvunyi CM, Mwikarago IE, Jacobs J, Deborggraeve S, Van Puyvelde S.
Rutanga JP, et al.
PLoS Negl Trop Dis. 2023 Jun 16;17(6):e0011285. doi: 10.1371/journal.pntd.0011285. eCollection 2023 Jun.
PLoS Negl Trop Dis. 2023.
PMID: 37327220
Free PMC article.
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Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.
Carey ME, Dyson ZA, Ingle DJ, Amir A, Aworh MK, Chattaway MA, Chew KL, Crump JA, Feasey NA, Howden BP, Keddy KH, Maes M, Parry CM, Van Puyvelde S, Webb HE, Afolayan AO, Alexander AP, Anandan S, Andrews JR, Ashton PM, Basnyat B, Bavdekar A, Bogoch II, Clemens JD, da Silva KE, De A, de Ligt J, Diaz Guevara PL, Dolecek C, Dutta S, Ehlers MM, Francois Watkins L, Garrett DO, Godbole G, Gordon MA, Greenhill AR, Griffin C, Gupta M, Hendriksen RS, Heyderman RS, Hooda Y, Hormazabal JC, Ikhimiukor OO, Iqbal J, Jacob JJ, Jenkins C, Jinka DR, John J, Kang G, Kanteh A, Kapil A, Karkey A, Kariuki S, Kingsley RA, Koshy RM, Lauer AC, Levine MM, Lingegowda RK, Luby SP, Mackenzie GA, Mashe T, Msefula C, Mutreja A, Nagaraj G, Nagaraj S, Nair S, Naseri TK, Nimarota-Brown S, Njamkepo E, Okeke IN, Perumal SPB, Pollard AJ, Pragasam AK, Qadri F, Qamar FN, Rahman SIA, Rambocus SD, Rasko DA, Ray P, Robins-Browne R, Rongsen-Chandola T, Rutanga JP, Saha SK, Saha S, Saigal K, Sajib MSI, Seidman JC, Shakya J, Shamanna V, Shastri J, Shrestha R, Sia S, Sikorski MJ, Singh A, Smith AM, Tagg KA, Tamrakar D, Tanmoy AM, Thomas M, Thomas MS, Thomsen R, Thomson NR, Tupua S, Vaidya K, Valcanis M, Veeraraghavan B,…
See abstract for full author list ➔
Carey ME, et al. Among authors: rutanga jp.
Elife. 2023 Sep 12;12:e85867. doi: 10.7554/eLife.85867.
Elife. 2023.
PMID: 37697804
Free PMC article.
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16S metagenomics for diagnosis of bloodstream infections: opportunities and pitfalls.
Rutanga JP, Van Puyvelde S, Heroes AS, Muvunyi CM, Jacobs J, Deborggraeve S.
Rutanga JP, et al.
Expert Rev Mol Diagn. 2018 Aug;18(8):749-759. doi: 10.1080/14737159.2018.1498786. Epub 2018 Jul 18.
Expert Rev Mol Diagn. 2018.
PMID: 29985081
Review.
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Clinical Significance of Molecular Diagnostic Tools for Bacterial Bloodstream Infections: A Systematic Review.
Rutanga JP, Nyirahabimana T.
Rutanga JP, et al.
Interdiscip Perspect Infect Dis. 2016;2016:6412085. doi: 10.1155/2016/6412085. Epub 2016 Nov 16.
Interdiscip Perspect Infect Dis. 2016.
PMID: 27974890
Free PMC article.
Review.
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