Rueda D - Search Results

1

DNA Bends the Knee to Transcription Factors.

Vámosi G, Rueda D. Vámosi G, et al. Among authors: rueda d. Biophys J. 2018 May 22;114(10):2253-2254. doi: 10.1016/j.bpj.2017.10.047. Epub 2017 Dec 8. Biophys J. 2018. PMID: 29229184 Free PMC article. No abstract available.

2

Laser-assisted single-molecule refolding (LASR).

Zhao R, Marshall M, Alemán EA, Lamichhane R, Feig A, Rueda D. Zhao R, et al. Among authors: rueda d. Biophys J. 2010 Sep 22;99(6):1925-31. doi: 10.1016/j.bpj.2010.07.019. Biophys J. 2010. PMID: 20858438 Free PMC article.

3

Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET.

Hardin JW, Warnasooriya C, Kondo Y, Nagai K, Rueda D. Hardin JW, et al. Among authors: rueda d. Nucleic Acids Res. 2015 Dec 15;43(22):10963-74. doi: 10.1093/nar/gkv1011. Epub 2015 Oct 25. Nucleic Acids Res. 2015. PMID: 26503251 Free PMC article.

4

Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.

Barbieri M, Xie SQ, Torlai Triglia E, Chiariello AM, Bianco S, de Santiago I, Branco MR, Rueda D, Nicodemi M, Pombo A. Barbieri M, et al. Among authors: rueda d. Nat Struct Mol Biol. 2017 Jun;24(6):515-524. doi: 10.1038/nsmb.3402. Epub 2017 Apr 24. Nat Struct Mol Biol. 2017. PMID: 28436944 Free article.

5

Optimal molecular crowding accelerates group II intron folding and maximizes catalysis.

Paudel BP, Fiorini E, Börner R, Sigel RKO, Rueda DS. Paudel BP, et al. Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):11917-11922. doi: 10.1073/pnas.1806685115. Epub 2018 Nov 5. Proc Natl Acad Sci U S A. 2018. PMID: 30397128 Free PMC article.

6

Search and processing of Holliday junctions within long DNA by junction-resolving enzymes.

Kaczmarczyk AP, Déclais AC, Newton MD, Boulton SJ, Lilley DMJ, Rueda DS. Kaczmarczyk AP, et al. Among authors: rueda ds. Nat Commun. 2022 Oct 7;13(1):5921. doi: 10.1038/s41467-022-33503-6. Nat Commun. 2022. PMID: 36207294 Free PMC article.

7

RNA folding dynamics using laser-assisted single-molecule refolding.

Paudel B, Rueda D. Paudel B, et al. Among authors: rueda d. Methods Mol Biol. 2014;1086:289-307. doi: 10.1007/978-1-62703-667-2_17. Methods Mol Biol. 2014. PMID: 24136611

8

Nucleotide selection by the Y-family DNA polymerase Dpo4 involves template translocation and misalignment.

Brenlla A, Markiewicz RP, Rueda D, Romano LJ. Brenlla A, et al. Among authors: rueda d. Nucleic Acids Res. 2014 Feb;42(4):2555-63. doi: 10.1093/nar/gkt1149. Epub 2013 Nov 21. Nucleic Acids Res. 2014. PMID: 24270793 Free PMC article.

9

HIV-1 DIS stem loop forms an obligatory bent kissing intermediate in the dimerization pathway.

Mundigala H, Michaux JB, Feig AL, Ennifar E, Rueda D. Mundigala H, et al. Among authors: rueda d. Nucleic Acids Res. 2014 Jun;42(11):7281-9. doi: 10.1093/nar/gku332. Epub 2014 May 9. Nucleic Acids Res. 2014. PMID: 24813449 Free PMC article.

10

Protein-RNA Dynamics in the Central Junction Control 30S Ribosome Assembly.

Baker KA, Lamichhane R, Lamichhane T, Rueda D, Cunningham PR. Baker KA, et al. Among authors: rueda d. J Mol Biol. 2016 Sep 11;428(18):3615-31. doi: 10.1016/j.jmb.2016.05.010. Epub 2016 May 15. J Mol Biol. 2016. PMID: 27192112

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