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Picroscope: low-cost system for simultaneous longitudinal biological imaging.
Ly VT, Baudin PV, Pansodtee P, Jung EA, Voitiuk K, Rosen YM, Willsey HR, Mantalas GL, Seiler ST, Selberg JA, Cordero SA, Ross JM, Rolandi M, Pollen AA, Nowakowski TJ, Haussler D, Mostajo-Radji MA, Salama SR, Teodorescu M. Ly VT, et al. Among authors: rosen ym. Commun Biol. 2021 Nov 4;4(1):1261. doi: 10.1038/s42003-021-02779-7. Commun Biol. 2021. PMID: 34737378 Free PMC article.
Canonical, stable, general mapping using context schemes.
Novak AM, Rosen Y, Haussler D, Paten B. Novak AM, et al. Bioinformatics. 2015 Nov 15;31(22):3569-76. doi: 10.1093/bioinformatics/btv435. Epub 2015 Jul 27. Bioinformatics. 2015. PMID: 26220960 Free PMC article.
Cloud-controlled microscopy enables remote project-based biology education in underserved Latinx communities.
Baudin PV, Sacksteder RE, Worthington AK, Voitiuk K, Ly VT, Hoffman RN, Elliott MAT, Parks DF, Ward R, Torres-Montoya S, Amend F, Montellano Duran N, Vargas PA, Martinez G, Ramirez SM, Alvarado-Arnez LE, Ehrlich D, Rosen YM, Breevoort A, Schouten T, Kurniawan S, Haussler D, Teodorescu M, Mostajo-Radji MA. Baudin PV, et al. Among authors: rosen ym. Heliyon. 2022 Nov 15;8(11):e11596. doi: 10.1016/j.heliyon.2022.e11596. eCollection 2022 Nov. Heliyon. 2022. PMID: 36439758 Free PMC article.
Internet-Connected Cortical Organoids for Project-Based Stem Cell and Neuroscience Education.
Elliott MAT, Schweiger HE, Robbins A, Vera-Choqqueccota S, Ehrlich D, Hernandez S, Voitiuk K, Geng J, Sevetson JL, Core C, Rosen YM, Teodorescu M, Wagner NO, Haussler D, Mostajo-Radji MA. Elliott MAT, et al. Among authors: rosen ym. eNeuro. 2023 Dec 26;10(12):ENEURO.0308-23.2023. doi: 10.1523/ENEURO.0308-23.2023. Print 2023 Dec. eNeuro. 2023. PMID: 38016807 Free PMC article.
Superbubbles, Ultrabubbles, and Cacti.
Paten B, Eizenga JM, Rosen YM, Novak AM, Garrison E, Hickey G. Paten B, et al. Among authors: rosen ym. J Comput Biol. 2018 Jul;25(7):649-663. doi: 10.1089/cmb.2017.0251. Epub 2018 Feb 20. J Comput Biol. 2018. PMID: 29461862 Free PMC article.
De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population.
Kessler MD, Loesch DP, Perry JA, Heard-Costa NL, Taliun D, Cade BE, Wang H, Daya M, Ziniti J, Datta S, Celedón JC, Soto-Quiros ME, Avila L, Weiss ST, Barnes K, Redline SS, Vasan RS, Johnson AD, Mathias RA, Hernandez R, Wilson JG, Nickerson DA, Abecasis G, Browning SR, Zöllner S, O'Connell JR, Mitchell BD; National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Population Genetics Working Group; O'Connor TD. Kessler MD, et al. Proc Natl Acad Sci U S A. 2020 Feb 4;117(5):2560-2569. doi: 10.1073/pnas.1902766117. Epub 2020 Jan 21. Proc Natl Acad Sci U S A. 2020. PMID: 31964835 Free PMC article.
Internet-connected cortical organoids for project-based stem cell and neuroscience education.
Elliott MAT, Schweiger HE, Robbins A, Vera-Choqqueccota S, Ehrlich D, Hernandez S, Voitiuk K, Geng J, Sevetson JL, Rosen YM, Teodorescu M, Wagner NO, Haussler D, Mostajo-Radji MA. Elliott MAT, et al. Among authors: rosen ym. bioRxiv [Preprint]. 2023 Jul 15:2023.07.13.546418. doi: 10.1101/2023.07.13.546418. bioRxiv. 2023. PMID: 37503236 Free PMC article. Updated. Preprint.