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SYCAMORE--a systems biology computational analysis and modeling research environment.
Weidemann A, Richter S, Stein M, Sahle S, Gauges R, Gabdoulline R, Surovtsova I, Semmelrock N, Besson B, Rojas I, Wade R, Kummer U. Weidemann A, et al. Among authors: rojas i. Bioinformatics. 2008 Jun 15;24(12):1463-4. doi: 10.1093/bioinformatics/btn207. Epub 2008 May 7. Bioinformatics. 2008. PMID: 18463116
SABIO-RK--database for biochemical reaction kinetics.
Wittig U, Kania R, Golebiewski M, Rey M, Shi L, Jong L, Algaa E, Weidemann A, Sauer-Danzwith H, Mir S, Krebs O, Bittkowski M, Wetsch E, Rojas I, Müller W. Wittig U, et al. Among authors: rojas i. Nucleic Acids Res. 2012 Jan;40(Database issue):D790-6. doi: 10.1093/nar/gkr1046. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102587 Free PMC article.
Storing and annotating of kinetic data.
Rojas I, Golebiewski M, Kania R, Krebs O, Mir S, Weidemann A, Wittig U. Rojas I, et al. In Silico Biol. 2007;7(2 Suppl):S37-44. In Silico Biol. 2007. PMID: 17822389
Challenges for an enzymatic reaction kinetics database.
Wittig U, Rey M, Kania R, Bittkowski M, Shi L, Golebiewski M, Weidemann A, Müller W, Rojas I. Wittig U, et al. Among authors: rojas i. FEBS J. 2014 Jan;281(2):572-82. doi: 10.1111/febs.12562. Epub 2013 Oct 25. FEBS J. 2014. PMID: 24165050 Free article. Review.
Web-based exchange of biochemical information.
Güler S, Eberhart A, Rojas I. Güler S, et al. Among authors: rojas i. Bioinformatics. 2003 Sep 1;19(13):1730-1. doi: 10.1093/bioinformatics/btg234. Bioinformatics. 2003. PMID: 15593411
Extraction of regulatory gene/protein networks from Medline.
Saric J, Jensen LJ, Ouzounova R, Rojas I, Bork P. Saric J, et al. Among authors: rojas i. Bioinformatics. 2006 Mar 15;22(6):645-50. doi: 10.1093/bioinformatics/bti597. Epub 2005 Jul 26. Bioinformatics. 2006. PMID: 16046493
Enzyme kinetics informatics: from instrument to browser.
Swainston N, Golebiewski M, Messiha HL, Malys N, Kania R, Kengne S, Krebs O, Mir S, Sauer-Danzwith H, Smallbone K, Weidemann A, Wittig U, Kell DB, Mendes P, Müller W, Paton NW, Rojas I. Swainston N, et al. Among authors: rojas i. FEBS J. 2010 Sep;277(18):3769-79. doi: 10.1111/j.1742-4658.2010.07778.x. Epub 2010 Aug 3. FEBS J. 2010. PMID: 20738395 Free article.
276 results