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An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.
Corces MR, Trevino AE, Hamilton EG, Greenside PG, Sinnott-Armstrong NA, Vesuna S, Satpathy AT, Rubin AJ, Montine KS, Wu B, Kathiria A, Cho SW, Mumbach MR, Carter AC, Kasowski M, Orloff LA, Risca VI, Kundaje A, Khavari PA, Montine TJ, Greenleaf WJ, Chang HY. Corces MR, et al. Among authors: risca vi. Nat Methods. 2017 Oct;14(10):959-962. doi: 10.1038/nmeth.4396. Epub 2017 Aug 28. Nat Methods. 2017. PMID: 28846090 Free PMC article.
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation.
Kim DS, Risca VI, Reynolds DL, Chappell J, Rubin AJ, Jung N, Donohue LKH, Lopez-Pajares V, Kathiria A, Shi M, Zhao Z, Deep H, Sharmin M, Rao D, Lin S, Chang HY, Snyder MP, Greenleaf WJ, Kundaje A, Khavari PA. Kim DS, et al. Among authors: risca vi. Nat Genet. 2021 Nov;53(11):1564-1576. doi: 10.1038/s41588-021-00947-3. Epub 2021 Oct 14. Nat Genet. 2021. PMID: 34650237 Free PMC article.
BLIMP1 Induces Transient Metastatic Heterogeneity in Pancreatic Cancer.
Chiou SH, Risca VI, Wang GX, Yang D, Grüner BM, Kathiria AS, Ma RK, Vaka D, Chu P, Kozak M, Castellini L, Graves EE, Kim GE, Mourrain P, Koong AC, Giaccia AJ, Winslow MM. Chiou SH, et al. Among authors: risca vi. Cancer Discov. 2017 Oct;7(10):1184-1199. doi: 10.1158/2159-8290.CD-17-0250. Epub 2017 Aug 8. Cancer Discov. 2017. PMID: 28790031 Free PMC article.
Chromatin-Associated RNA Sequencing (ChAR-seq).
Jukam D, Limouse C, Smith OK, Risca VI, Bell JC, Straight AF. Jukam D, et al. Among authors: risca vi. Curr Protoc Mol Biol. 2019 Apr;126(1):e87. doi: 10.1002/cpmb.87. Epub 2019 Feb 20. Curr Protoc Mol Biol. 2019. PMID: 30786161 Free PMC article.
17 results