Rice EJ - Search Results

1

Prediction of histone post-translational modification patterns based on nascent transcription data.

Wang Z, Chivu AG, Choate LA, Rice EJ, Miller DC, Chu T, Chou SP, Kingsley NB, Petersen JL, Finno CJ, Bellone RR, Antczak DF, Lis JT, Danko CG. Wang Z, et al. Among authors: rice ej. Nat Genet. 2022 Mar;54(3):295-305. doi: 10.1038/s41588-022-01026-x. Epub 2022 Mar 10. Nat Genet. 2022. PMID: 35273399 Free PMC article.

2

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution.

Blumberg A, Rice EJ, Kundaje A, Danko CG, Mishmar D. Blumberg A, et al. Among authors: rice ej. Genome Res. 2017 Mar;27(3):362-373. doi: 10.1101/gr.209924.116. Epub 2017 Jan 3. Genome Res. 2017. PMID: 28049628 Free PMC article.

3

XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris).

Meyers-Wallen VN, Boyko AR, Danko CG, Grenier JK, Mezey JG, Hayward JJ, Shannon LM, Gao C, Shafquat A, Rice EJ, Pujar S, Eggers S, Ohnesorg T, Sinclair AH. Meyers-Wallen VN, et al. Among authors: rice ej. PLoS One. 2017 Oct 20;12(10):e0186331. doi: 10.1371/journal.pone.0186331. eCollection 2017. PLoS One. 2017. PMID: 29053721 Free PMC article.

4

Dynamic evolution of regulatory element ensembles in primate CD4⁺ T cells.

Danko CG, Choate LA, Marks BA, Rice EJ, Wang Z, Chu T, Martins AL, Dukler N, Coonrod SA, Tait Wojno ED, Lis JT, Kraus WL, Siepel A. Danko CG, et al. Among authors: rice ej. Nat Ecol Evol. 2018 Mar;2(3):537-548. doi: 10.1038/s41559-017-0447-5. Epub 2018 Jan 29. Nat Ecol Evol. 2018. PMID: 29379187 Free PMC article.

5

ER-positive breast cancer cells are poised for RET-mediated endocrine resistance.

Horibata S, Rice EJ, Mukai C, Marks BA, Sams K, Zheng H, Anguish LJ, Coonrod SA, Danko CG. Horibata S, et al. Among authors: rice ej. PLoS One. 2018 Apr 2;13(4):e0194023. doi: 10.1371/journal.pone.0194023. eCollection 2018. PLoS One. 2018. PMID: 29608602 Free PMC article.

6

A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer.

Horibata S, Rice EJ, Zheng H, Mukai C, Chu T, Marks BA, Coonrod SA, Danko CG. Horibata S, et al. Among authors: rice ej. PLoS One. 2018 Apr 3;13(4):e0194522. doi: 10.1371/journal.pone.0194522. eCollection 2018. PLoS One. 2018. PMID: 29614078 Free PMC article.

7

Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme.

Chu T, Rice EJ, Booth GT, Salamanca HH, Wang Z, Core LJ, Longo SL, Corona RJ, Chin LS, Lis JT, Kwak H, Danko CG. Chu T, et al. Among authors: rice ej. Nat Genet. 2018 Nov;50(11):1553-1564. doi: 10.1038/s41588-018-0244-3. Epub 2018 Oct 22. Nat Genet. 2018. PMID: 30349114 Free PMC article.

8

Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution.

Blumberg A, Rice EJ, Kundaje A, Danko CG, Mishmar D. Blumberg A, et al. Among authors: rice ej. Genome Res. 2019 Apr;29(4):710.1. doi: 10.1101/gr.248971.119. Genome Res. 2019. PMID: 30936176 Free PMC article. No abstract available.

9

Chromatin run-on sequencing analysis finds that ECM remodeling plays an important role in canine hemangiosarcoma pathogenesis.

Mukai C, Choi E, Sams KL, Klampen EZ, Anguish L, Marks BA, Rice EJ, Wang Z, Choate LA, Chou SP, Kato Y, Miller AD, Danko CG, Coonrod SA. Mukai C, et al. Among authors: rice ej. BMC Vet Res. 2020 Jun 22;16(1):206. doi: 10.1186/s12917-020-02395-3. BMC Vet Res. 2020. PMID: 32571313 Free PMC article.

10

Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data.

Blumberg A, Zhao Y, Huang YF, Dukler N, Rice EJ, Chivu AG, Krumholz K, Danko CG, Siepel A. Blumberg A, et al. Among authors: rice ej. BMC Biol. 2021 Feb 15;19(1):30. doi: 10.1186/s12915-021-00949-x. BMC Biol. 2021. PMID: 33588838 Free PMC article.

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