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Multi-species annotation of transcriptome and chromatin structure in domesticated animals.
Foissac S, Djebali S, Munyard K, Vialaneix N, Rau A, Muret K, Esquerré D, Zytnicki M, Derrien T, Bardou P, Blanc F, Cabau C, Crisci E, Dhorne-Pollet S, Drouet F, Faraut T, Gonzalez I, Goubil A, Lacroix-Lamandé S, Laurent F, Marthey S, Marti-Marimon M, Momal-Leisenring R, Mompart F, Quéré P, Robelin D, Cristobal MS, Tosser-Klopp G, Vincent-Naulleau S, Fabre S, Pinard-Van der Laan MH, Klopp C, Tixier-Boichard M, Acloque H, Lagarrigue S, Giuffra E. Foissac S, et al. Among authors: rau a. BMC Biol. 2019 Dec 30;17(1):108. doi: 10.1186/s12915-019-0726-5. BMC Biol. 2019. PMID: 31884969 Free PMC article.
Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach.
Jehl F, Désert C, Klopp C, Brenet M, Rau A, Leroux S, Boutin M, Lagoutte L, Muret K, Blum Y, Esquerré D, Gourichon D, Burlot T, Collin A, Pitel F, Benani A, Zerjal T, Lagarrigue S. Jehl F, et al. Among authors: rau a. BMC Genomics. 2019 Dec 30;20(1):1033. doi: 10.1186/s12864-019-6384-8. BMC Genomics. 2019. PMID: 31888468 Free PMC article.
Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models.
Rau A, Maugis-Rabusseau C, Martin-Magniette ML, Celeux G. Rau A, et al. Bioinformatics. 2015 May 1;31(9):1420-7. doi: 10.1093/bioinformatics/btu845. Epub 2015 Jan 5. Bioinformatics. 2015. PMID: 25563332
RESULTS: In this work, we focus on the question of clustering DGE profiles as a means to discover groups of co-expressed genes. We propose a Poisson mixture model using a rigorous framework for parameter estimation as well as the choice of the appropriate num …
RESULTS: In this work, we focus on the question of clustering DGE profiles as a means to discover groups of co-expressed genes. We pr …
394 results