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Sparsely Connected Autoencoders: A Multi-Purpose Tool for Single Cell omics Analysis.
Int J Mol Sci. 2021 Nov 25;22(23):12755. doi: 10.3390/ijms222312755.
Int J Mol Sci. 2021.
PMID: 34884559
Free PMC article.
Identifying Gene Markers Associated with Cell Subpopulations.
Ratto ML, Alessandri L.
Ratto ML, et al.
Methods Mol Biol. 2023;2584:251-268. doi: 10.1007/978-1-0716-2756-3_13.
Methods Mol Biol. 2023.
PMID: 36495455
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A single cell RNAseq benchmark experiment embedding "controlled" cancer heterogeneity.
Arigoni M, Ratto ML, Riccardo F, Balmas E, Calogero L, Cordero F, Beccuti M, Calogero RA, Alessandri L.
Arigoni M, et al. Among authors: ratto ml.
Sci Data. 2024 Feb 2;11(1):159. doi: 10.1038/s41597-024-03002-y.
Sci Data. 2024.
PMID: 38307867
Free PMC article.
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CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications.
Alessandri S, Ratto ML, Rabellino S, Piacenti G, Contaldo SG, Pernice S, Beccuti M, Calogero RA, Alessandri L.
Alessandri S, et al. Among authors: ratto ml.
BMC Bioinformatics. 2024 Mar 12;25(1):110. doi: 10.1186/s12859-024-05695-9.
BMC Bioinformatics. 2024.
PMID: 38475691
Free PMC article.
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Manipulating and studying gene function in human pluripotent stem cell models.
Balmas E, Sozza F, Bottini S, Ratto ML, Savorè G, Becca S, Snijders KE, Bertero A.
Balmas E, et al. Among authors: ratto ml.
FEBS Lett. 2023 Sep;597(18):2250-2287. doi: 10.1002/1873-3468.14709. Epub 2023 Aug 8.
FEBS Lett. 2023.
PMID: 37519013
Review.
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