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TreeToReads - a pipeline for simulating raw reads from phylogenies.
McTavish EJ, Pettengill J, Davis S, Rand H, Strain E, Allard M, Timme RE. McTavish EJ, et al. Among authors: rand h. BMC Bioinformatics. 2017 Mar 20;18(1):178. doi: 10.1186/s12859-017-1592-1. BMC Bioinformatics. 2017. PMID: 28320310 Free PMC article.
Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance.
Timme RE, Strain E, Baugher JD, Davis S, Gonzalez-Escalona N, Sanchez Leon M, Allard MW, Brown EW, Tallent S, Rand H. Timme RE, et al. Among authors: rand h. J Clin Microbiol. 2019 Apr 26;57(5):e01816-18. doi: 10.1128/JCM.01816-18. Print 2019 May. J Clin Microbiol. 2019. PMID: 30728194 Free PMC article. Review.
Whole genome sequencing uses for foodborne contamination and compliance: Discovery of an emerging contamination event in an ice cream facility using whole genome sequencing.
Allard MW, Strain E, Rand H, Melka D, Correll WA, Hintz L, Stevens E, Timme R, Lomonaco S, Chen Y, Musser SM, Brown EW. Allard MW, et al. Among authors: rand h. Infect Genet Evol. 2019 Sep;73:214-220. doi: 10.1016/j.meegid.2019.04.026. Epub 2019 Apr 27. Infect Genet Evol. 2019. PMID: 31039448 Free article. Review.
A multinational listeriosis outbreak and the importance of sharing genomic data.
Pettengill JB, Markell A, Conrad A, Carleton HA, Beal J, Rand H, Musser S, Brown EW, Allard MW, Huffman J, Harris S, Wise M, Locas A. Pettengill JB, et al. Among authors: rand h. Lancet Microbe. 2020 Oct;1(6):e233-e234. doi: 10.1016/S2666-5247(20)30122-1. Epub 2020 Oct 7. Lancet Microbe. 2020. PMID: 35544215 Free PMC article. No abstract available.
71 results