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Year | Number of Results |
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2020 | 1 |
2021 | 1 |
2022 | 1 |
2023 | 1 |
2024 | 2 |
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BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies.
Nucleic Acids Res. 2024 Apr 12;52(6):e32. doi: 10.1093/nar/gkae097.
Nucleic Acids Res. 2024.
PMID: 38412294
Free PMC article.
Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing.
Morrison J, Zhou W, Johnson BK, Shen H.
Morrison J, et al.
Bioinformatics. 2023 Dec 1;39(12):btad729. doi: 10.1093/bioinformatics/btad729.
Bioinformatics. 2023.
PMID: 38092060
Free PMC article.
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Cell State of Origin Impacts Development of Distinct Endometriosis-Related Ovarian Carcinoma Histotypes.
Beddows I, Fan H, Heinze K, Johnson BK, Leonova A, Senz J, Djirackor S, Cho KR, Pearce CL, Huntsman DG, Anglesio MS, Shen H.
Beddows I, et al.
Cancer Res. 2024 Jan 2;84(1):26-38. doi: 10.1158/0008-5472.CAN-23-1362.
Cancer Res. 2024.
PMID: 37874327
Free PMC article.
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DNA methylation dynamics and dysregulation delineated by high-throughput profiling in the mouse.
Zhou W, Hinoue T, Barnes B, Mitchell O, Iqbal W, Lee SM, Foy KK, Lee KH, Moyer EJ, VanderArk A, Koeman JM, Ding W, Kalkat M, Spix NJ, Eagleson B, Pospisilik JA, Szabó PE, Bartolomei MS, Vander Schaaf NA, Kang L, Wiseman AK, Jones PA, Krawczyk CM, Adams M, Porecha R, Chen BH, Shen H, Laird PW.
Zhou W, et al.
Cell Genom. 2022 Jul 13;2(7):100144. doi: 10.1016/j.xgen.2022.100144.
Cell Genom. 2022.
PMID: 35873672
Free PMC article.
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Evaluation of whole-genome DNA methylation sequencing library preparation protocols.
Morrison J, Koeman JM, Johnson BK, Foy KK, Beddows I, Zhou W, Chesla DW, Rossell LL, Siegwald EJ, Adams M, Shen H.
Morrison J, et al.
Epigenetics Chromatin. 2021 Jun 19;14(1):28. doi: 10.1186/s13072-021-00401-y.
Epigenetics Chromatin. 2021.
PMID: 34147133
Free PMC article.
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Epigenomic Reprogramming toward Mesenchymal-Epithelial Transition in Ovarian-Cancer-Associated Mesenchymal Stem Cells Drives Metastasis.
Fan H, Atiya HI, Wang Y, Pisanic TR, Wang TH, Shih IM, Foy KK, Frisbie L, Buckanovich RJ, Chomiak AA, Tiedemann RL, Rothbart SB, Chandler C, Shen H, Coffman LG.
Fan H, et al.
Cell Rep. 2020 Dec 8;33(10):108473. doi: 10.1016/j.celrep.2020.108473.
Cell Rep. 2020.
PMID: 33296650
Free PMC article.
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