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2017 | 2 |
2020 | 1 |
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A framework for detecting noncoding rare-variant associations of large-scale whole-genome sequencing studies.
Nat Methods. 2022 Dec;19(12):1599-1611. doi: 10.1038/s41592-022-01640-x. Epub 2022 Oct 27.
Nat Methods. 2022.
PMID: 36303018
Free PMC article.
Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale.
Li X, Li Z, Zhou H, Gaynor SM, Liu Y, Chen H, Sun R, Dey R, Arnett DK, Aslibekyan S, Ballantyne CM, Bielak LF, Blangero J, Boerwinkle E, Bowden DW, Broome JG, Conomos MP, Correa A, Cupples LA, Curran JE, Freedman BI, Guo X, Hindy G, Irvin MR, Kardia SLR, Kathiresan S, Khan AT, Kooperberg CL, Laurie CC, Liu XS, Mahaney MC, Manichaikul AW, Martin LW, Mathias RA, McGarvey ST, Mitchell BD, Montasser ME, Moore JE, Morrison AC, O'Connell JR, Palmer ND, Pampana A, Peralta JM, Peyser PA, Psaty BM, Redline S, Rice KM, Rich SS, Smith JA, Tiwari HK, Tsai MY, Vasan RS, Wang FF, Weeks DE, Weng Z, Wilson JG, Yanek LR; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Lipids Working Group; Neale BM, Sunyaev SR, Abecasis GR, Rotter JI, Willer CJ, Peloso GM, Natarajan P, Lin X.
Li X, et al.
Nat Genet. 2020 Sep;52(9):969-983. doi: 10.1038/s41588-020-0676-4. Epub 2020 Aug 24.
Nat Genet. 2020.
PMID: 32839606
Free PMC article.
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Challenges and emerging directions in single-cell analysis.
Yuan GC, Cai L, Elowitz M, Enver T, Fan G, Guo G, Irizarry R, Kharchenko P, Kim J, Orkin S, Quackenbush J, Saadatpour A, Schroeder T, Shivdasani R, Tirosh I.
Yuan GC, et al.
Genome Biol. 2017 May 8;18(1):84. doi: 10.1186/s13059-017-1218-y.
Genome Biol. 2017.
PMID: 28482897
Free PMC article.
Review.
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Recent progress in single-cell cancer genomics.
Tsoucas D, Yuan GC.
Tsoucas D, et al.
Curr Opin Genet Dev. 2017 Feb;42:22-32. doi: 10.1016/j.gde.2017.01.002. Epub 2017 Jan 23.
Curr Opin Genet Dev. 2017.
PMID: 28126650
Free PMC article.
Review.
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Estimation using penalized quasilikelihood and quasi-pseudo-likelihood in Poisson mixed models.
Lin X.
Lin X.
Lifetime Data Anal. 2007 Dec;13(4):533-44. doi: 10.1007/s10985-007-9071-z. Epub 2007 Dec 16.
Lifetime Data Anal. 2007.
PMID: 18080833
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