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Complex Portal 2022: new curation frontiers.
Meldal BHM, Perfetto L, Combe C, Lubiana T, Ferreira Cavalcante JV, Bye-A-Jee H, Waagmeester A, Del-Toro N, Shrivastava A, Barrera E, Wong E, Mlecnik B, Bindea G, Panneerselvam K, Willighagen E, Rappsilber J, Porras P, Hermjakob H, Orchard S. Meldal BHM, et al. Nucleic Acids Res. 2022 Jan 7;50(D1):D578-D586. doi: 10.1093/nar/gkab991. Nucleic Acids Res. 2022. PMID: 34718729 Free PMC article.
UniProt Tools.
Pundir S, Martin MJ, O'Donovan C; UniProt Consortium. Pundir S, et al. Curr Protoc Bioinformatics. 2016 Mar 24;53:1.29.1-1.29.15. doi: 10.1002/0471250953.bi0129s53. Curr Protoc Bioinformatics. 2016. PMID: 27010333 Free PMC article.
Searching and Navigating UniProt Databases.
Pundir S, Magrane M, Martin MJ, O'Donovan C; UniProt Consortium. Pundir S, et al. Curr Protoc Bioinformatics. 2015 Jun 19;50:1.27.1-1.27.10. doi: 10.1002/0471250953.bi0127s50. Curr Protoc Bioinformatics. 2015. PMID: 26088053 Free PMC article.
Key challenges for the creation and maintenance of specialist protein resources.
Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, Spedding M, Srinivasan N, Vriend G, Babbitt PC, Bateman A. Holliday GL, et al. Proteins. 2015 Jun;83(6):1005-13. doi: 10.1002/prot.24803. Epub 2015 Apr 22. Proteins. 2015. PMID: 25820941 Free PMC article.
UniProt: a hub for protein information.
UniProt Consortium. UniProt Consortium. Nucleic Acids Res. 2015 Jan;43(Database issue):D204-12. doi: 10.1093/nar/gku989. Epub 2014 Oct 27. Nucleic Acids Res. 2015. PMID: 25348405 Free PMC article.
The representation of protein complexes in the Protein Ontology (PRO).
Bult CJ, Drabkin HJ, Evsikov A, Natale D, Arighi C, Roberts N, Ruttenberg A, D'Eustachio P, Smith B, Blake JA, Wu C. Bult CJ, et al. BMC Bioinformatics. 2011 Sep 19;12:371. doi: 10.1186/1471-2105-12-371. BMC Bioinformatics. 2011. PMID: 21929785 Free PMC article.
The Protein Ontology: a structured representation of protein forms and complexes.
Natale DA, Arighi CN, Barker WC, Blake JA, Bult CJ, Caudy M, Drabkin HJ, D'Eustachio P, Evsikov AV, Huang H, Nchoutmboube J, Roberts NV, Smith B, Zhang J, Wu CH. Natale DA, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D539-45. doi: 10.1093/nar/gkq907. Epub 2010 Oct 8. Nucleic Acids Res. 2011. PMID: 20935045 Free PMC article.