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Computational tools for metabolic engineering.
Copeland WB, Bartley BA, Chandran D, Galdzicki M, Kim KH, Sleight SC, Maranas CD, Sauro HM. Copeland WB, et al. Metab Eng. 2012 May;14(3):270-80. doi: 10.1016/j.ymben.2012.03.001. Metab Eng. 2012. PMID: 22629572 Free PMC article. Review.
Antimony: a modular model definition language.
Smith LP, Bergmann FT, Chandran D, Sauro HM. Smith LP, et al. Bioinformatics. 2009 Sep 15;25(18):2452-4. doi: 10.1093/bioinformatics/btp401. Epub 2009 Jul 3. Bioinformatics. 2009. PMID: 19578039 Free PMC article.
Network dynamics.
Sauro HM. Sauro HM. Methods Mol Biol. 2009;541:269. doi: 10.1007/978-1-59745-243-4_13. Methods Mol Biol. 2009. PMID: 19381543 Free PMC article. Review.
Comparing simulation results of SBML capable simulators.
Bergmann FT, Sauro HM. Bergmann FT, et al. Bioinformatics. 2008 Sep 1;24(17):1963-5. doi: 10.1093/bioinformatics/btn319. Epub 2008 Jun 25. Bioinformatics. 2008. PMID: 18579569 Free PMC article.