R01 GM078031/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2008	2
2009	1
2010	2
2011	1
2012	6
2013	4
2014	5
2015	6
2016	5
2017	5
2018	4
2019	5
2020	2
2022	3
2023	1
2024	0

1

Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design.

Holt GT, Gorman J, Wang S, Lowegard AU, Zhang B, Liu T, Lin BC, Louder MK, Frenkel MS, McKee K, O'Dell S, Rawi R, Shen CH, Doria-Rose NA, Kwong PD, Donald BR. Holt GT, et al. Cell Rep. 2023 Jul 25;42(7):112711. doi: 10.1016/j.celrep.2023.112711. Epub 2023 Jul 11. Cell Rep. 2023. PMID: 37436900 Free PMC article.

2

Resistor: An algorithm for predicting resistance mutations via Pareto optimization over multistate protein design and mutational signatures.

Guerin N, Feichtner A, Stefan E, Kaserer T, Donald BR. Guerin N, et al. Cell Syst. 2022 Oct 19;13(10):830-843.e3. doi: 10.1016/j.cels.2022.09.003. Cell Syst. 2022. PMID: 36265469 Free PMC article.

3

RESISTOR: A New OSPREY Module to Predict Resistance Mutations.

Guerin N, Kaserer T, Donald BR. Guerin N, et al. J Comput Biol. 2022 Dec;29(12):1346-1352. doi: 10.1089/cmb.2022.0254. Epub 2022 Sep 13. J Comput Biol. 2022. PMID: 36099194 Free PMC article.

4

Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus.

Wang S, Reeve SM, Holt GT, Ojewole AA, Frenkel MS, Gainza P, Keshipeddy S, Fowler VG, Wright DL, Donald BR. Wang S, et al. PLoS Comput Biol. 2022 Feb 10;18(2):e1009855. doi: 10.1371/journal.pcbi.1009855. eCollection 2022 Feb. PLoS Comput Biol. 2022. PMID: 35143481 Free PMC article.

5

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface.

Lowegard AU, Frenkel MS, Holt GT, Jou JD, Ojewole AA, Donald BR. Lowegard AU, et al. PLoS Comput Biol. 2020 Jun 8;16(6):e1007447. doi: 10.1371/journal.pcbi.1007447. eCollection 2020 Jun. PLoS Comput Biol. 2020. PMID: 32511232 Free PMC article.

6

Minimization-Aware Recursive K*: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape.

Jou JD, Holt GT, Lowegard AU, Donald BR. Jou JD, et al. J Comput Biol. 2020 Apr;27(4):550-564. doi: 10.1089/cmb.2019.0315. Epub 2019 Dec 6. J Comput Biol. 2020. PMID: 31855059 Free PMC article.

7

Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand.

Holt GT, Jou JD, Gill NP, Lowegard AU, Martin JW, Madden DR, Donald BR. Holt GT, et al. J Phys Chem B. 2019 Dec 12;123(49):10441-10455. doi: 10.1021/acs.jpcb.9b07278. Epub 2019 Nov 27. J Phys Chem B. 2019. PMID: 31697075 Free PMC article.

8

Protein Design by Provable Algorithms.

Hallen MA, Donald BR. Hallen MA, et al. Commun ACM. 2019 Oct;62(10):76-84. doi: 10.1145/3338124. Commun ACM. 2019. PMID: 31607753 Free PMC article.

9

Toward Broad Spectrum Dihydrofolate Reductase Inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin Resistant Staphylococcus aureus.

Reeve SM, Si D, Krucinska J, Yan Y, Viswanathan K, Wang S, Holt GT, Frenkel MS, Ojewole AA, Estrada A, Agabiti SS, Alverson JB, Gibson ND, Priestley ND, Wiemer AJ, Donald BR, Wright DL. Reeve SM, et al. ACS Infect Dis. 2019 Nov 8;5(11):1896-1906. doi: 10.1021/acsinfecdis.9b00222. Epub 2019 Oct 15. ACS Infect Dis. 2019. PMID: 31565920 Free PMC article.

10

Minimal NMR distance information for rigidity of protein graphs.

Lavor C, Liberti L, Donald B, Worley B, Bardiaux B, Malliavin TE, Nilges M. Lavor C, et al. Discrete Appl Math. 2019 Mar 15;256:91-104. doi: 10.1016/j.dam.2018.03.071. Epub 2018 Apr 26. Discrete Appl Math. 2019. PMID: 30799888 Free PMC article.

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