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Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pan-genome hybrid selection.
Young MG, Straub TJ, Worby CJ, Metsky HC, Gnirke A, Bronson RA, van Dijk LR, Desjardins CA, Matranga C, Qu J, Dodson K, Schreiber HL 4th, Manson AL, Hultgren SJ, Earl AM. Young MG, et al. bioRxiv [Preprint]. 2024 Feb 29:2024.02.29.582780. doi: 10.1101/2024.02.29.582780. bioRxiv. 2024. PMID: 38463963 Free PMC article. Preprint.
Strain Tracking with Uncertainty Quantification.
Kim Y, Worby CJ, Acharya S, van Dijk LR, Alfonsetti D, Gromko Z, Azimzadeh P, Dodson K, Gerber G, Hultgren S, Earl AM, Berger B, Gibson TE. Kim Y, et al. bioRxiv [Preprint]. 2023 Jan 26:2023.01.25.525531. doi: 10.1101/2023.01.25.525531. bioRxiv. 2023. PMID: 36747646 Free PMC article. Preprint.
Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women.
Worby CJ, Schreiber HL 4th, Straub TJ, van Dijk LR, Bronson RA, Olson BS, Pinkner JS, Obernuefemann CLP, Muñoz VL, Paharik AE, Azimzadeh PN, Walker BJ, Desjardins CA, Chou WC, Bergeron K, Chapman SB, Klim A, Manson AL, Hannan TJ, Hooton TM, Kau AL, Lai HH, Dodson KW, Hultgren SJ, Earl AM. Worby CJ, et al. Nat Microbiol. 2022 May;7(5):630-639. doi: 10.1038/s41564-022-01107-x. Epub 2022 May 2. Nat Microbiol. 2022. PMID: 35505248 Free PMC article.
Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections.
Straub TJ, Chou WC, Manson AL, Schreiber HL 4th, Walker BJ, Desjardins CA, Chapman SB, Kaspar KL, Kahsai OJ, Traylor E, Dodson KW, Hullar MAJ, Hultgren SJ, Khoo C, Earl AM. Straub TJ, et al. BMC Microbiol. 2021 Feb 18;21(1):53. doi: 10.1186/s12866-021-02106-4. BMC Microbiol. 2021. PMID: 33596852 Free PMC article. Clinical Trial.