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Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R. Gan X, et al. Among authors: ratsch g. Nature. 2011 Aug 28;477(7365):419-23. doi: 10.1038/nature10414. Nature. 2011. PMID: 21874022 Free PMC article.
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.
Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, Rätsch G, Ecker JR, Weigel D. Clark RM, et al. Among authors: ratsch g. Science. 2007 Jul 20;317(5836):338-42. doi: 10.1126/science.1138632. Science. 2007. PMID: 17641193
mGene.web: a web service for accurate computational gene finding.
Schweikert G, Behr J, Zien A, Zeller G, Ong CS, Sonnenburg S, Rätsch G. Schweikert G, et al. Among authors: ratsch g. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W312-6. doi: 10.1093/nar/gkp479. Epub 2009 Jun 3. Nucleic Acids Res. 2009. PMID: 19494180 Free PMC article.
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.
McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, Bustamante CD, Weigel D, Mackill DJ, Bruskiewich RM, Rätsch G, Buell CR, Leung H, Leach JE. McNally KL, et al. Among authors: ratsch g. Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12273-8. doi: 10.1073/pnas.0900992106. Epub 2009 Jul 13. Proc Natl Acad Sci U S A. 2009. PMID: 19597147 Free PMC article.
rQuant.web: a tool for RNA-Seq-based transcript quantitation.
Bohnert R, Rätsch G. Bohnert R, et al. Among authors: ratsch g. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W348-51. doi: 10.1093/nar/gkq448. Epub 2010 Jun 15. Nucleic Acids Res. 2010. PMID: 20551130 Free PMC article.
RNA-Seq read alignments with PALMapper.
Jean G, Kahles A, Sreedharan VT, De Bona F, Rätsch G. Jean G, et al. Among authors: ratsch g. Curr Protoc Bioinformatics. 2010 Dec;Chapter 11:Unit 11.6. doi: 10.1002/0471250953.bi1106s32. Curr Protoc Bioinformatics. 2010. PMID: 21154708
164 results