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Shifts in the Human Gut Microbiota Structure Caused by Quadruple Helicobacter pylori Eradication Therapy.
Front Microbiol. 2019 Aug 27;10:1902. doi: 10.3389/fmicb.2019.01902. eCollection 2019.
Front Microbiol. 2019.
PMID: 31507546
Free PMC article.
Draft genomes of Enterococcus faecium strains isolated from human feces before and after eradication therapy against Helicobacter pylori.
Prianichnikov NA, Malakhova MV, Babenko VV, Larin AK, Olekhnovich EI, Starikova EV, Chuvelev DI, Glushchenko OE, Samoilov AE, Manolov AI, Kovarsky BA, Tyakht AV, Pavlenko AV, Ilina EN, Kostryukova ES.
Prianichnikov NA, et al.
Data Brief. 2017 Nov 27;16:511-514. doi: 10.1016/j.dib.2017.11.069. eCollection 2018 Feb.
Data Brief. 2017.
PMID: 29270449
Free PMC article.
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VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota.
Glushchenko OE, Prianichnikov NA, Olekhnovich EI, Manolov AI, Tyakht AV, Starikova EV, Odintsova VE, Kostryukova ES, Ilina EI.
Glushchenko OE, et al. Among authors: prianichnikov na.
Bioinformatics. 2019 Oct 1;35(19):3803-3811. doi: 10.1093/bioinformatics/btz154.
Bioinformatics. 2019.
PMID: 30825306
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[Bioinformatics analysis of antimicrobial resistance genes and prophages colocalized in human gut metagenomes].
Starikova EV, Prianichnikov NA, Zdobnov E, Govorun VM.
Starikova EV, et al. Among authors: prianichnikov na.
Biomed Khim. 2017 Nov;63(6):508-512. doi: 10.18097/PBMC20176306508.
Biomed Khim. 2017.
PMID: 29251611
Russian.
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Phigaro: high-throughput prophage sequence annotation.
Starikova EV, Tikhonova PO, Prianichnikov NA, Rands CM, Zdobnov EM, Ilina EN, Govorun VM.
Starikova EV, et al. Among authors: prianichnikov na.
Bioinformatics. 2020 Jun 1;36(12):3882-3884. doi: 10.1093/bioinformatics/btaa250.
Bioinformatics. 2020.
PMID: 32311023
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MaxDIA enables library-based and library-free data-independent acquisition proteomics.
Sinitcyn P, Hamzeiy H, Salinas Soto F, Itzhak D, McCarthy F, Wichmann C, Steger M, Ohmayer U, Distler U, Kaspar-Schoenefeld S, Prianichnikov N, Yılmaz Ş, Rudolph JD, Tenzer S, Perez-Riverol Y, Nagaraj N, Humphrey SJ, Cox J.
Sinitcyn P, et al.
Nat Biotechnol. 2021 Dec;39(12):1563-1573. doi: 10.1038/s41587-021-00968-7. Epub 2021 Jul 8.
Nat Biotechnol. 2021.
PMID: 34239088
Free PMC article.
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MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics.
Prianichnikov N, Koch H, Koch S, Lubeck M, Heilig R, Brehmer S, Fischer R, Cox J.
Prianichnikov N, et al.
Mol Cell Proteomics. 2020 Jun;19(6):1058-1069. doi: 10.1074/mcp.TIR119.001720. Epub 2020 Mar 10.
Mol Cell Proteomics. 2020.
PMID: 32156793
Free PMC article.
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