Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

909 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Functional landscape of SARS-CoV-2 cellular restriction.
Martin-Sancho L, Lewinski MK, Pache L, Stoneham CA, Yin X, Becker ME, Pratt D, Churas C, Rosenthal SB, Liu S, Weston S, De Jesus PD, O'Neill AM, Gounder AP, Nguyen C, Pu Y, Curry HM, Oom AL, Miorin L, Rodriguez-Frandsen A, Zheng F, Wu C, Xiong Y, Urbanowski M, Shaw ML, Chang MW, Benner C, Hope TJ, Frieman MB, García-Sastre A, Ideker T, Hultquist JF, Guatelli J, Chanda SK. Martin-Sancho L, et al. Among authors: pratt d. Mol Cell. 2021 Jun 17;81(12):2656-2668.e8. doi: 10.1016/j.molcel.2021.04.008. Epub 2021 Apr 13. Mol Cell. 2021. PMID: 33930332 Free PMC article.
NeXO Web: the NeXO ontology database and visualization platform.
Dutkowski J, Ono K, Kramer M, Yu M, Pratt D, Demchak B, Ideker T. Dutkowski J, et al. Among authors: pratt d. Nucleic Acids Res. 2014 Jan;42(Database issue):D1269-74. doi: 10.1093/nar/gkt1192. Epub 2013 Nov 23. Nucleic Acids Res. 2014. PMID: 24271398 Free PMC article.
Network propagation in the cytoscape cyberinfrastructure.
Carlin DE, Demchak B, Pratt D, Sage E, Ideker T. Carlin DE, et al. Among authors: pratt d. PLoS Comput Biol. 2017 Oct 12;13(10):e1005598. doi: 10.1371/journal.pcbi.1005598. eCollection 2017 Oct. PLoS Comput Biol. 2017. PMID: 29023449 Free PMC article.
ndexr-an R package to interface with the network data exchange.
Auer F, Hammoud Z, Ishkin A, Pratt D, Ideker T, Kramer F. Auer F, et al. Among authors: pratt d. Bioinformatics. 2018 Feb 15;34(4):716-717. doi: 10.1093/bioinformatics/btx683. Bioinformatics. 2018. PMID: 29087446 Free PMC article.
NDEx 2.0: A Clearinghouse for Research on Cancer Pathways.
Pratt D, Chen J, Pillich R, Rynkov V, Gary A, Demchak B, Ideker T. Pratt D, et al. Cancer Res. 2017 Nov 1;77(21):e58-e61. doi: 10.1158/0008-5472.CAN-17-0606. Cancer Res. 2017. PMID: 29092941 Free PMC article.
Identifying persistent structures in multiscale 'omics data.
Zheng F, Zhang S, Churas C, Pratt D, Bahar I, Ideker T. Zheng F, et al. Among authors: pratt d. bioRxiv [Preprint]. 2020 Oct 3:2020.06.16.151555. doi: 10.1101/2020.06.16.151555. bioRxiv. 2020. PMID: 32587977 Free PMC article. Updated. Preprint.
Functional Landscape of SARS-CoV-2 Cellular Restriction.
Martin-Sancho L, Lewinski MK, Pache L, Stoneham CA, Yin X, Pratt D, Churas C, Rosenthal SB, Liu S, De Jesus PD, O'Neill AM, Gounder AP, Nguyen C, Pu Y, Oom AL, Miorin L, Rodriguez-Frandsen A, Urbanowski M, Shaw ML, Chang MW, Benner C, Frieman MB, García-Sastre A, Ideker T, Hultquist JF, Guatelli J, Chanda SK. Martin-Sancho L, et al. Among authors: pratt d. bioRxiv [Preprint]. 2020 Sep 30:2020.09.29.319566. doi: 10.1101/2020.09.29.319566. bioRxiv. 2020. PMID: 33024967 Free PMC article. Updated. Preprint.
Multiscale community detection in Cytoscape.
Singhal A, Cao S, Churas C, Pratt D, Fortunato S, Zheng F, Ideker T. Singhal A, et al. Among authors: pratt d. PLoS Comput Biol. 2020 Oct 23;16(10):e1008239. doi: 10.1371/journal.pcbi.1008239. eCollection 2020 Oct. PLoS Comput Biol. 2020. PMID: 33095781 Free PMC article.
909 results