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Mapping human pathogens in wastewater using a metatranscriptomic approach.
Carneiro J, Pascoal F, Semedo M, Pratas D, Tomasino MP, Rego A, Carvalho MF, Mucha AP, Magalhães C. Carneiro J, et al. Among authors: pratas d. Environ Res. 2023 Aug 15;231(Pt 1):116040. doi: 10.1016/j.envres.2023.116040. Epub 2023 May 5. Environ Res. 2023. PMID: 37150387 Free PMC article.
Efficient DNA sequence compression with neural networks.
Silva M, Pratas D, Pinho AJ. Silva M, et al. Among authors: pratas d. Gigascience. 2020 Nov 11;9(11):giaa119. doi: 10.1093/gigascience/giaa119. Gigascience. 2020. PMID: 33179040 Free PMC article.
Persistent minimal sequences of SARS-CoV-2.
Pratas D, Silva JM. Pratas D, et al. Bioinformatics. 2021 Jan 29;36(21):5129-5132. doi: 10.1093/bioinformatics/btaa686. Bioinformatics. 2021. PMID: 32730589 Free PMC article.
Unmasking the tissue-resident eukaryotic DNA virome in humans.
Pyöriä L, Pratas D, Toppinen M, Hedman K, Sajantila A, Perdomo MF. Pyöriä L, et al. Among authors: pratas d. Nucleic Acids Res. 2023 Apr 24;51(7):3223-3239. doi: 10.1093/nar/gkad199. Nucleic Acids Res. 2023. PMID: 36951096 Free PMC article.
The complexity landscape of viral genomes.
Silva JM, Pratas D, Caetano T, Matos S. Silva JM, et al. Among authors: pratas d. Gigascience. 2022 Aug 11;11:giac079. doi: 10.1093/gigascience/giac079. Gigascience. 2022. PMID: 35950839 Free PMC article.
The Human Bone Marrow Is Host to the DNAs of Several Viruses.
Toppinen M, Sajantila A, Pratas D, Hedman K, Perdomo MF. Toppinen M, et al. Among authors: pratas d. Front Cell Infect Microbiol. 2021 Apr 22;11:657245. doi: 10.3389/fcimb.2021.657245. eCollection 2021. Front Cell Infect Microbiol. 2021. PMID: 33968803 Free PMC article.
Compressing resequencing data with GReEn.
Pinho AJ, Pratas D, Garcia SP. Pinho AJ, et al. Among authors: pratas d. Methods Mol Biol. 2013;1038:27-37. doi: 10.1007/978-1-62703-514-9_2. Methods Mol Biol. 2013. PMID: 23872967
31 results