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Page 1
Dispersal history of SARS-CoV-2 in Galicia, Spain.
Gallego-García P, Estévez-Gómez N, De Chiara L, Alvariño P, Juiz-González PM, Torres-Beceiro I, Poza M, Vallejo JA, Rumbo-Feal S, Conde-Pérez K, Aja-Macaya P, Ladra S, Moreno-Flores A, Gude-González MJ, Coira A, Aguilera A, Costa-Alcalde JJ, Trastoy R, Barbeito-Castiñeiras G, García-Souto D, Tubio JMC, Trigo-Daporta M, Camacho-Zamora P, Costa JG, González-Domínguez M, Canoura-Fernández L, Glez-Peña D, Pérez-Castro S, Cabrera JJ, Daviña-Núñez C, Godoy-Diz M, Treinta-Álvarez AB, Veiga MI, Sousa JC, Osório NS, Comas I, González-Candelas F, Hong SL, Bollen N, Dellicour S, Baele G, Suchard MA, Lemey P, Agulla A, Bou G, Alonso-García P, Pérez-Del-Molino ML, García-Campello M, Paz-Vidal I, Regueiro B, Posada D. Gallego-García P, et al. Among authors: posada d. medRxiv [Preprint]. 2024 Feb 28:2024.02.27.24303385. doi: 10.1101/2024.02.27.24303385. medRxiv. 2024. PMID: 38463998 Free PMC article. Preprint.
Crykey: Rapid Identification of SARS-CoV-2 Cryptic Mutations in Wastewater.
Liu Y, Sapoval N, Gallego-García P, Tomás L, Posada D, Treangen TJ, Stadler LB. Liu Y, et al. Among authors: posada d. medRxiv [Preprint]. 2023 Nov 12:2023.06.16.23291524. doi: 10.1101/2023.06.16.23291524. medRxiv. 2023. PMID: 37986916 Free PMC article. Preprint.
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters.
Gallego-García P, Varela N, Estévez-Gómez N, De Chiara L, Fernández-Silva I, Valverde D, Sapoval N, Treangen TJ, Regueiro B, Cabrera-Alvargonzález JJ, Del Campo V, Pérez S, Posada D. Gallego-García P, et al. Among authors: posada d. Virus Evol. 2022 Feb 4;8(1):veac008. doi: 10.1093/ve/veac008. eCollection 2022. Virus Evol. 2022. PMID: 35242361 Free PMC article.
OmniSARS2: A Highly Sensitive and Specific RT-qPCR-Based COVID-19 Diagnostic Method Designed to Withstand SARS-CoV-2 Lineage Evolution.
Carvalho-Correia E, Calçada C, Branca F, Estévez-Gómez N, De Chiara L, Varela N, Gallego-García P, Posada D, Sousa H, Sousa J, Veiga MI, Osório NS. Carvalho-Correia E, et al. Among authors: posada d. Biomedicines. 2021 Sep 26;9(10):1314. doi: 10.3390/biomedicines9101314. Biomedicines. 2021. PMID: 34680431 Free PMC article.
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020.
Hodcroft EB, Zuber M, Nadeau S, Vaughan TG, Crawford KHD, Althaus CL, Reichmuth ML, Bowen JE, Walls AC, Corti D, Bloom JD, Veesler D, Mateo D, Hernando A, Comas I, González-Candelas F; SeqCOVID-SPAIN consortium; Stadler T, Neher RA. Hodcroft EB, et al. Nature. 2021 Jul;595(7869):707-712. doi: 10.1038/s41586-021-03677-y. Epub 2021 Jun 7. Nature. 2021. PMID: 34098568
SARS-CoV-2 Evolution and Spike-Specific CD4+ T-Cell Response in Persistent COVID-19 with Severe HIV Immune Suppression.
Álvarez H, Ruiz-Mateos E, Juiz-González PM, Vitallé J, Viéitez I, Vázquez-Friol MDC, Torres-Beceiro I, Pérez-Gómez A, Gallego-García P, Estévez-Gómez N, De Chiara L, Poveda E, Posada D, Llibre JM. Álvarez H, et al. Among authors: posada d. Microorganisms. 2022 Jan 11;10(1):143. doi: 10.3390/microorganisms10010143. Microorganisms. 2022. PMID: 35056592 Free PMC article.
The first wave of the COVID-19 epidemic in Spain was associated with early introductions and fast spread of a dominating genetic variant.
López MG, Chiner-Oms Á, García de Viedma D, Ruiz-Rodriguez P, Bracho MA, Cancino-Muñoz I, D'Auria G, de Marco G, García-González N, Goig GA, Gómez-Navarro I, Jiménez-Serrano S, Martinez-Priego L, Ruiz-Hueso P, Ruiz-Roldán L, Torres-Puente M, Alberola J, Albert E, Aranzamendi Zaldumbide M, Bea-Escudero MP, Boga JA, Bordoy AE, Canut-Blasco A, Carvajal A, Cilla Eguiluz G, Cordón Rodríguez ML, Costa-Alcalde JJ, de Toro M, de Toro Peinado I, Del Pozo JL, Duchêne S, Fernández-Pinero J, Fuster Escrivá B, Gimeno Cardona C, González Galán V, Gonzalo Jiménez N, Hernáez Crespo S, Herranz M, Lepe JA, López-Causapé C, López-Hontangas JL, Martín V, Martró E, Milagro Beamonte A, Montes Ros M, Moreno-Muñoz R, Navarro D, Navarro-Marí JM, Not A, Oliver A, Palop-Borrás B, Parra Grande M, Pedrosa-Corral I, Pérez González MC, Pérez-Lago L, Pérez-Ruiz M, Piñeiro Vázquez L, Rabella N, Rezusta A, Robles Fonseca L, Rodríguez-Villodres Á, Sanbonmatsu-Gámez S, Sicilia J, Soriano A, Tirado Balaguer MD, Torres I, Tristancho A, Marimón JM; SeqCOVID-Spain consortium; Coscolla M, González-Candelas F, Comas I. López MG, et al. Nat Genet. 2021 Oct;53(10):1405-1414. doi: 10.1038/s41588-021-00936-6. Epub 2021 Sep 30. Nat Genet. 2021. PMID: 34594042 Free PMC article.
Analysing recombination in nucleotide sequences.
Martin DP, Lemey P, Posada D. Martin DP, et al. Among authors: posada d. Mol Ecol Resour. 2011 Nov;11(6):943-55. doi: 10.1111/j.1755-0998.2011.03026.x. Epub 2011 May 19. Mol Ecol Resour. 2011. PMID: 21592314 Review.
HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations.
Faria NR, Rambaut A, Suchard MA, Baele G, Bedford T, Ward MJ, Tatem AJ, Sousa JD, Arinaminpathy N, Pépin J, Posada D, Peeters M, Pybus OG, Lemey P. Faria NR, et al. Among authors: posada d. Science. 2014 Oct 3;346(6205):56-61. doi: 10.1126/science.1256739. Epub 2014 Oct 2. Science. 2014. PMID: 25278604 Free PMC article.
ALTER: program-oriented conversion of DNA and protein alignments.
Glez-Peña D, Gómez-Blanco D, Reboiro-Jato M, Fdez-Riverola F, Posada D. Glez-Peña D, et al. Among authors: posada d. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W14-8. doi: 10.1093/nar/gkq321. Epub 2010 May 3. Nucleic Acids Res. 2010. PMID: 20439312 Free PMC article.
160 results