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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR. Shaikh B, et al. Among authors: petzold lr. Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331. Nucleic Acids Res. 2022. PMID: 35524558 Free PMC article.
Spatial stochastic dynamics enable robust cell polarization.
Lawson MJ, Drawert B, Khammash M, Petzold L, Yi TM. Lawson MJ, et al. PLoS Comput Biol. 2013;9(7):e1003139. doi: 10.1371/journal.pcbi.1003139. Epub 2013 Jul 25. PLoS Comput Biol. 2013. PMID: 23935469 Free PMC article.
The effect of cell geometry on polarization in budding yeast.
Trogdon M, Drawert B, Gomez C, Banavar SP, Yi TM, Campàs O, Petzold LR. Trogdon M, et al. Among authors: petzold lr. PLoS Comput Biol. 2018 Jun 11;14(6):e1006241. doi: 10.1371/journal.pcbi.1006241. eCollection 2018 Jun. PLoS Comput Biol. 2018. PMID: 29889845 Free PMC article.
115 results