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BioModels: ten-year anniversary.
Nucleic Acids Res. 2015 Jan;43(Database issue):D542-8. doi: 10.1093/nar/gku1181. Epub 2014 Nov 20.
Nucleic Acids Res. 2015.
PMID: 25414348
Free PMC article.
The systems biology format converter.
Rodriguez N, Pettit JB, Dalle Pezze P, Li L, Henry A, van Iersel MP, Jalowicki G, Kutmon M, Natarajan KN, Tolnay D, Stefan MI, Evelo CT, Le Novère N.
Rodriguez N, et al. Among authors: pettit jb.
BMC Bioinformatics. 2016 Apr 5;17:154. doi: 10.1186/s12859-016-1000-2.
BMC Bioinformatics. 2016.
PMID: 27044654
Free PMC article.
Item in Clipboard
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members.
Keating SM, et al.
Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110.
Mol Syst Biol. 2020.
PMID: 32845085
Free PMC article.
Review.
Item in Clipboard
bioWeb3D: an online webGL 3D data visualisation tool.
Pettit JB, Marioni JC.
Pettit JB, et al.
BMC Bioinformatics. 2013 Jun 7;14:185. doi: 10.1186/1471-2105-14-185.
BMC Bioinformatics. 2013.
PMID: 23758781
Free PMC article.
Item in Clipboard
Identifying cell types from spatially referenced single-cell expression datasets.
Pettit JB, Tomer R, Achim K, Richardson S, Azizi L, Marioni J.
Pettit JB, et al.
PLoS Comput Biol. 2014 Sep 25;10(9):e1003824. doi: 10.1371/journal.pcbi.1003824. eCollection 2014 Sep.
PLoS Comput Biol. 2014.
PMID: 25254363
Free PMC article.
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High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin.
Achim K, Pettit JB, Saraiva LR, Gavriouchkina D, Larsson T, Arendt D, Marioni JC.
Achim K, et al. Among authors: pettit jb.
Nat Biotechnol. 2015 May;33(5):503-9. doi: 10.1038/nbt.3209. Epub 2015 Apr 13.
Nat Biotechnol. 2015.
PMID: 25867922
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Spatial Transcriptomics: Constructing a Single-Cell Resolution Transcriptome-Wide Expression Atlas.
Achim K, Vergara HM, Pettit JB.
Achim K, et al. Among authors: pettit jb.
Methods Mol Biol. 2018;1649:111-125. doi: 10.1007/978-1-4939-7213-5_7.
Methods Mol Biol. 2018.
PMID: 29130193
Item in Clipboard
Emergency Response to COVID: An IRB Story.
Pettit JB.
Pettit JB.
Narrat Inq Bioeth. 2021;11(1):84-87. doi: 10.1353/nib.2021.0033.
Narrat Inq Bioeth. 2021.
PMID: 34334481
No abstract available.
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