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MD-TASK: a software suite for analyzing molecular dynamics trajectories.
Bioinformatics. 2017 Sep 1;33(17):2768-2771. doi: 10.1093/bioinformatics/btx349.
Bioinformatics. 2017.
PMID: 28575169
Free PMC article.
Allosteric Modulation of Human Hsp90α Conformational Dynamics.
Penkler DL, Atilgan C, Tastan Bishop Ö.
Penkler DL, et al.
J Chem Inf Model. 2018 Feb 26;58(2):383-404. doi: 10.1021/acs.jcim.7b00630. Epub 2018 Feb 12.
J Chem Inf Model. 2018.
PMID: 29378140
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Perturbation-Response Scanning Reveals Key Residues for Allosteric Control in Hsp70.
Penkler D, Sensoy Ö, Atilgan C, Tastan Bishop Ö.
Penkler D, et al.
J Chem Inf Model. 2017 Jun 26;57(6):1359-1374. doi: 10.1021/acs.jcim.6b00775. Epub 2017 Jun 12.
J Chem Inf Model. 2017.
PMID: 28505454
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SANCDB: a South African natural compound database.
Hatherley R, Brown DK, Musyoka TM, Penkler DL, Faya N, Lobb KA, Tastan Bishop Ö.
Hatherley R, et al. Among authors: penkler dl.
J Cheminform. 2015 Jun 19;7:29. doi: 10.1186/s13321-015-0080-8. eCollection 2015.
J Cheminform. 2015.
PMID: 26097510
Free PMC article.
Item in Clipboard
JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing.
Brown DK, Penkler DL, Musyoka TM, Bishop ÖT.
Brown DK, et al. Among authors: penkler dl.
PLoS One. 2015 Aug 17;10(8):e0134273. doi: 10.1371/journal.pone.0134273. eCollection 2015.
PLoS One. 2015.
PMID: 26280450
Free PMC article.
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Modulation of Human Hsp90α Conformational Dynamics by Allosteric Ligand Interaction at the C-Terminal Domain.
Penkler DL, Tastan Bishop Ö.
Penkler DL, et al.
Sci Rep. 2019 Feb 7;9(1):1600. doi: 10.1038/s41598-018-35835-0.
Sci Rep. 2019.
PMID: 30733455
Free PMC article.
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Human, vector and parasite Hsp90 proteins: A comparative bioinformatics analysis.
Faya N, Penkler DL, Tastan Bishop Ö.
Faya N, et al. Among authors: penkler dl.
FEBS Open Bio. 2015 Nov 14;5:916-27. doi: 10.1016/j.fob.2015.11.003. eCollection 2015.
FEBS Open Bio. 2015.
PMID: 26793431
Free PMC article.
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Binding and entry of a non-enveloped T=4 insect RNA virus is triggered by alkaline pH.
Penkler DL, Jiwaji M, Domitrovic T, Short JR, Johnson JE, Dorrington RA.
Penkler DL, et al.
Virology. 2016 Nov;498:277-287. doi: 10.1016/j.virol.2016.08.028. Epub 2016 Sep 9.
Virology. 2016.
PMID: 27614703
Free article.
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