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2015 7
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2020 6
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Page 1
Reply to: Prospects and challenges for FAIR toxicogenomics data.
Grafström R, Haase A, Kohonen P, Jeliazkova N, Nymark P. Grafström R, et al. Among authors: kohonen p. Nat Nanotechnol. 2022 Jan;17(1):19-20. doi: 10.1038/s41565-021-01050-8. Epub 2021 Dec 23. Nat Nanotechnol. 2022. PMID: 34949776 No abstract available.
Towards FAIR nanosafety data.
Jeliazkova N, Apostolova MD, Andreoli C, Barone F, Barrick A, Battistelli C, Bossa C, Botea-Petcu A, Châtel A, De Angelis I, Dusinska M, El Yamani N, Gheorghe D, Giusti A, Gómez-Fernández P, Grafström R, Gromelski M, Jacobsen NR, Jeliazkov V, Jensen KA, Kochev N, Kohonen P, Manier N, Mariussen E, Mech A, Navas JM, Paskaleva V, Precupas A, Puzyn T, Rasmussen K, Ritchie P, Llopis IR, Rundén-Pran E, Sandu R, Shandilya N, Tanasescu S, Haase A, Nymark P. Jeliazkova N, et al. Among authors: kohonen p. Nat Nanotechnol. 2021 Jun;16(6):644-654. doi: 10.1038/s41565-021-00911-6. Epub 2021 May 20. Nat Nanotechnol. 2021. PMID: 34017099
Can an InChI for Nano Address the Need for a Simplified Representation of Complex Nanomaterials across Experimental and Nanoinformatics Studies?
Lynch I, Afantitis A, Exner T, Himly M, Lobaskin V, Doganis P, Maier D, Sanabria N, Papadiamantis AG, Rybinska-Fryca A, Gromelski M, Puzyn T, Willighagen E, Johnston BD, Gulumian M, Matzke M, Green Etxabe A, Bossa N, Serra A, Liampa I, Harper S, Tämm K, Jensen AC, Kohonen P, Slater L, Tsoumanis A, Greco D, Winkler DA, Sarimveis H, Melagraki G. Lynch I, et al. Among authors: kohonen p. Nanomaterials (Basel). 2020 Dec 11;10(12):2493. doi: 10.3390/nano10122493. Nanomaterials (Basel). 2020. PMID: 33322568 Free PMC article.
Transcriptomics in Toxicogenomics, Part II: Preprocessing and Differential Expression Analysis for High Quality Data.
Federico A, Serra A, Ha MK, Kohonen P, Choi JS, Liampa I, Nymark P, Sanabria N, Cattelani L, Fratello M, Kinaret PAS, Jagiello K, Puzyn T, Melagraki G, Gulumian M, Afantitis A, Sarimveis H, Yoon TH, Grafström R, Greco D. Federico A, et al. Among authors: kohonen p. Nanomaterials (Basel). 2020 May 8;10(5):903. doi: 10.3390/nano10050903. Nanomaterials (Basel). 2020. PMID: 32397130 Free PMC article. Review.
Transcriptomics in Toxicogenomics, Part I: Experimental Design, Technologies, Publicly Available Data, and Regulatory Aspects.
Kinaret PAS, Serra A, Federico A, Kohonen P, Nymark P, Liampa I, Ha MK, Choi JS, Jagiello K, Sanabria N, Melagraki G, Cattelani L, Fratello M, Sarimveis H, Afantitis A, Yoon TH, Gulumian M, Grafström R, Puzyn T, Greco D. Kinaret PAS, et al. Among authors: kohonen p. Nanomaterials (Basel). 2020 Apr 15;10(4):750. doi: 10.3390/nano10040750. Nanomaterials (Basel). 2020. PMID: 32326418 Free PMC article. Review.
Transcriptomics in Toxicogenomics, Part III: Data Modelling for Risk Assessment.
Serra A, Fratello M, Cattelani L, Liampa I, Melagraki G, Kohonen P, Nymark P, Federico A, Kinaret PAS, Jagiello K, Ha MK, Choi JS, Sanabria N, Gulumian M, Puzyn T, Yoon TH, Sarimveis H, Grafström R, Afantitis A, Greco D. Serra A, et al. Among authors: kohonen p. Nanomaterials (Basel). 2020 Apr 8;10(4):708. doi: 10.3390/nano10040708. Nanomaterials (Basel). 2020. PMID: 32276469 Free PMC article. Review.
NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for in silico nanosafety assessment.
Afantitis A, Melagraki G, Isigonis P, Tsoumanis A, Varsou DD, Valsami-Jones E, Papadiamantis A, Ellis LA, Sarimveis H, Doganis P, Karatzas P, Tsiros P, Liampa I, Lobaskin V, Greco D, Serra A, Kinaret PAS, Saarimäki LA, Grafström R, Kohonen P, Nymark P, Willighagen E, Puzyn T, Rybinska-Fryca A, Lyubartsev A, Alstrup Jensen K, Brandenburg JG, Lofts S, Svendsen C, Harrison S, Maier D, Tamm K, Jänes J, Sikk L, Dusinska M, Longhin E, Rundén-Pran E, Mariussen E, El Yamani N, Unger W, Radnik J, Tropsha A, Cohen Y, Leszczynski J, Ogilvie Hendren C, Wiesner M, Winkler D, Suzuki N, Yoon TH, Choi JS, Sanabria N, Gulumian M, Lynch I. Afantitis A, et al. Among authors: kohonen p. Comput Struct Biotechnol J. 2020 Mar 7;18:583-602. doi: 10.1016/j.csbj.2020.02.023. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32226594 Free PMC article. Review.
Toward Rigorous Materials Production: New Approach Methodologies Have Extensive Potential to Improve Current Safety Assessment Practices.
Nymark P, Bakker M, Dekkers S, Franken R, Fransman W, García-Bilbao A, Greco D, Gulumian M, Hadrup N, Halappanavar S, Hongisto V, Hougaard KS, Jensen KA, Kohonen P, Koivisto AJ, Dal Maso M, Oosterwijk T, Poikkimäki M, Rodriguez-Llopis I, Stierum R, Sørli JB, Grafström R. Nymark P, et al. Among authors: kohonen p. Small. 2020 Feb;16(6):e1904749. doi: 10.1002/smll.201904749. Epub 2020 Jan 8. Small. 2020. PMID: 31913582 Review.
Integrated analysis of in vitro data and the adverse outcome pathway framework for prioritization and regulatory applications: An exploratory case study using publicly available data on piperonyl butoxide and liver models.
Oki NO, Farcal L, Abdelaziz A, Florean O, Doktorova TY, Exner T, Kohonen P, Grafström R, Hardy B. Oki NO, et al. Among authors: kohonen p. Toxicol In Vitro. 2019 Feb;54:23-32. doi: 10.1016/j.tiv.2018.09.002. Epub 2018 Sep 7. Toxicol In Vitro. 2019. PMID: 30196099 Free article.
46 results