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A toolbox of machine learning software to support microbiome analysis.
Marcos-Zambrano LJ, López-Molina VM, Bakir-Gungor B, Frohme M, Karaduzovic-Hadziabdic K, Klammsteiner T, Ibrahimi E, Lahti L, Loncar-Turukalo T, Dhamo X, Simeon A, Nechyporenko A, Pio G, Przymus P, Sampri A, Trajkovik V, Lacruz-Pleguezuelos B, Aasmets O, Araujo R, Anagnostopoulos I, Aydemir Ö, Berland M, Calle ML, Ceci M, Duman H, Gündoğdu A, Havulinna AS, Kaka Bra KHN, Kalluci E, Karav S, Lode D, Lopes MB, May P, Nap B, Nedyalkova M, Paciência I, Pasic L, Pujolassos M, Shigdel R, Susín A, Thiele I, Truică CO, Wilmes P, Yilmaz E, Yousef M, Claesson MJ, Truu J, Carrillo de Santa Pau E. Marcos-Zambrano LJ, et al. Among authors: pasic l. Front Microbiol. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806. eCollection 2023. Front Microbiol. 2023. PMID: 38075858 Free PMC article. Review.
The MothersBabies Study, an Australian Prospective Cohort Study Analyzing the Microbiome in the Preconception and Perinatal Period to Determine Risk of Adverse Pregnancy, Postpartum, and Child-Related Health Outcomes: Study Protocol.
Strout N, Pasic L, Hicks C, Chua XY, Tashvighi N, Butler P, Liu Z, El-Assaad F, Holmes E, Susic D, Samaras K, Craig ME, Davis GK, Henry A, Ledger WL, El-Omar EM. Strout N, et al. Among authors: pasic l. Int J Environ Res Public Health. 2023 Sep 9;20(18):6736. doi: 10.3390/ijerph20186736. Int J Environ Res Public Health. 2023. PMID: 37754596 Free PMC article.
Pneumocystis jirovecii genetic diversity in a Spanish tertiary hospital.
Goterris L, Pasic L, Guerrero Murillo M, Kan A, Anton A, Aguilar Company J, Ruiz-Camps I, Meyer W, Martin-Gomez MT. Goterris L, et al. Among authors: pasic l. Med Mycol. 2021 Dec 8;60(1):myab065. doi: 10.1093/mmy/myab065. Med Mycol. 2021. PMID: 34698858
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions.
Moreno-Indias I, Lahti L, Nedyalkova M, Elbere I, Roshchupkin G, Adilovic M, Aydemir O, Bakir-Gungor B, Santa Pau EC, D'Elia D, Desai MS, Falquet L, Gundogdu A, Hron K, Klammsteiner T, Lopes MB, Marcos-Zambrano LJ, Marques C, Mason M, May P, Pašić L, Pio G, Pongor S, Promponas VJ, Przymus P, Saez-Rodriguez J, Sampri A, Shigdel R, Stres B, Suharoschi R, Truu J, Truică CO, Vilne B, Vlachakis D, Yilmaz E, Zeller G, Zomer AL, Gómez-Cabrero D, Claesson MJ. Moreno-Indias I, et al. Among authors: pasic l. Front Microbiol. 2021 Feb 22;12:635781. doi: 10.3389/fmicb.2021.635781. eCollection 2021. Front Microbiol. 2021. PMID: 33692771 Free PMC article.
Agonistic anti-CD148 monoclonal antibody attenuates diabetic nephropathy in mice.
Takahashi K, Kim RH, Pasic L, He L, Nagasaka S, Katagiri D, May T, Shimizu A, Harris RC, Mernaugh RL, Takahashi T. Takahashi K, et al. Among authors: pasic l. Am J Physiol Renal Physiol. 2020 Mar 1;318(3):F647-F659. doi: 10.1152/ajprenal.00288.2019. Epub 2020 Jan 27. Am J Physiol Renal Physiol. 2020. PMID: 31984788 Free PMC article.
Long-read sequencing based clinical metagenomics for the detection and confirmation of Pneumocystis jirovecii directly from clinical specimens: A paradigm shift in mycological diagnostics.
Irinyi L, Hu Y, Hoang MTV, Pasic L, Halliday C, Jayawardena M, Basu I, McKinney W, Morris AJ, Rathjen J, Stone E, Chen S, Sorrell TC, Schwessinger B, Meyer W. Irinyi L, et al. Among authors: pasic l. Med Mycol. 2020 Jul 1;58(5):650-660. doi: 10.1093/mmy/myz109. Med Mycol. 2020. PMID: 31758176
36 results