Papantonis A - Search Results

1

HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types.

Zirkel A, Nikolic M, Sofiadis K, Mallm JP, Brackley CA, Gothe H, Drechsel O, Becker C, Altmüller J, Josipovic N, Georgomanolis T, Brant L, Franzen J, Koker M, Gusmao EG, Costa IG, Ullrich RT, Wagner W, Roukos V, Nürnberg P, Marenduzzo D, Rippe K, Papantonis A. Zirkel A, et al. Among authors: papantonis a. Mol Cell. 2018 May 17;70(4):730-744.e6. doi: 10.1016/j.molcel.2018.03.030. Epub 2018 Apr 26. Mol Cell. 2018. PMID: 29706538 Free article.

2

Space exploration by the promoter of a long human gene during one transcription cycle.

Larkin JD, Papantonis A, Cook PR, Marenduzzo D. Larkin JD, et al. Among authors: papantonis a. Nucleic Acids Res. 2013 Feb 1;41(4):2216-27. doi: 10.1093/nar/gks1441. Epub 2013 Jan 8. Nucleic Acids Res. 2013. PMID: 23303786 Free PMC article.

3

Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization.

Brackley CA, Taylor S, Papantonis A, Cook PR, Marenduzzo D. Brackley CA, et al. Among authors: papantonis a. Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):E3605-11. doi: 10.1073/pnas.1302950110. Epub 2013 Sep 3. Proc Natl Acad Sci U S A. 2013. PMID: 24003126 Free PMC article.

4

Transcription as a force partitioning the eukaryotic genome.

Zirkel A, Papantonis A. Zirkel A, et al. Among authors: papantonis a. Biol Chem. 2014 Nov 1;395(11):1301-5. doi: 10.1515/hsz-2014-0196. Biol Chem. 2014. PMID: 25205722 Review.

5

TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning.

Diermeier S, Kolovos P, Heizinger L, Schwartz U, Georgomanolis T, Zirkel A, Wedemann G, Grosveld F, Knoch TA, Merkl R, Cook PR, Längst G, Papantonis A. Diermeier S, et al. Among authors: papantonis a. Genome Biol. 2014 Dec 3;15(12):536. doi: 10.1186/s13059-014-0536-6. Genome Biol. 2014. PMID: 25608606 Free PMC article.

6

Splicing of many human genes involves sites embedded within introns.

Kelly S, Georgomanolis T, Zirkel A, Diermeier S, O'Reilly D, Murphy S, Längst G, Cook PR, Papantonis A. Kelly S, et al. Among authors: papantonis a. Nucleic Acids Res. 2015 May 19;43(9):4721-32. doi: 10.1093/nar/gkv386. Epub 2015 Apr 20. Nucleic Acids Res. 2015. PMID: 25897131 Free PMC article.

7

Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories.

Caudron-Herger M, Cook PR, Rippe K, Papantonis A. Caudron-Herger M, et al. Among authors: papantonis a. Nucleic Acids Res. 2015 Aug 18;43(14):e95. doi: 10.1093/nar/gkv390. Epub 2015 Apr 20. Nucleic Acids Res. 2015. PMID: 25897132 Free PMC article.

8

Isolation of the protein and RNA content of active sites of transcription from mammalian cells.

Melnik S, Caudron-Herger M, Brant L, Carr IM, Rippe K, Cook PR, Papantonis A. Melnik S, et al. Among authors: papantonis a. Nat Protoc. 2016 Mar;11(3):553-65. doi: 10.1038/nprot.2016.032. Epub 2016 Feb 25. Nat Protoc. 2016. PMID: 26914315 Free article.

9

Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response.

Kolovos P, Georgomanolis T, Koeferle A, Larkin JD, Brant L, Nikolicć M, Gusmao EG, Zirkel A, Knoch TA, van Ijcken WF, Cook PR, Costa IG, Grosveld FG, Papantonis A. Kolovos P, et al. Among authors: papantonis a. Genome Res. 2016 Nov;26(11):1478-1489. doi: 10.1101/gr.210005.116. Epub 2016 Sep 15. Genome Res. 2016. PMID: 27633323 Free PMC article.

10

Senescence-associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells.

Franzen J, Zirkel A, Blake J, Rath B, Benes V, Papantonis A, Wagner W. Franzen J, et al. Among authors: papantonis a. Aging Cell. 2017 Feb;16(1):183-191. doi: 10.1111/acel.12544. Epub 2016 Oct 26. Aging Cell. 2017. PMID: 27785870 Free PMC article.

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