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11th German Conference on Chemoinformatics (GCC 2015) : Fulda, Germany. 8-10 November 2015.
J Cheminform. 2016 Apr 26;8(Suppl 1):18. doi: 10.1186/s13321-016-0119-5.
J Cheminform. 2016.
PMID: 29270804
Free PMC article.
No abstract available.
TRAPP webserver: predicting protein binding site flexibility and detecting transient binding pockets.
Stank A, Kokh DB, Horn M, Sizikova E, Neil R, Panecka J, Richter S, Wade RC.
Stank A, et al. Among authors: panecka j.
Nucleic Acids Res. 2017 Jul 3;45(W1):W325-W330. doi: 10.1093/nar/gkx277.
Nucleic Acids Res. 2017.
PMID: 28431137
Free PMC article.
Item in Clipboard
Interplay of the bacterial ribosomal A-site, S12 protein mutations and paromomycin binding: a molecular dynamics study.
Panecka J, Mura C, Trylska J.
Panecka J, et al.
PLoS One. 2014 Nov 7;9(11):e111811. doi: 10.1371/journal.pone.0111811. eCollection 2014.
PLoS One. 2014.
PMID: 25379961
Free PMC article.
Item in Clipboard
Role of S-turn2 in the structure, dynamics, and function of mitochondrial ribosomal A-site. A bioinformatics and molecular dynamics simulation study.
Panecka J, Havrila M, Réblová K, Šponer J, Trylska J.
Panecka J, et al.
J Phys Chem B. 2014 Jun 19;118(24):6687-701. doi: 10.1021/jp5030685. Epub 2014 Jun 6.
J Phys Chem B. 2014.
PMID: 24845793
Item in Clipboard
Molecular dynamics of potential rRNA binders: single-stranded nucleic acids and some analogues.
Panecka J, Mura C, Trylska J.
Panecka J, et al.
J Phys Chem B. 2011 Jan 27;115(3):532-46. doi: 10.1021/jp106404u. Epub 2010 Dec 30.
J Phys Chem B. 2011.
PMID: 21192664
Item in Clipboard
Conformational dynamics of bacterial and human cytoplasmic models of the ribosomal A-site.
Panecka J, Šponer J, Trylska J.
Panecka J, et al.
Biochimie. 2015 May;112:96-110. doi: 10.1016/j.biochi.2015.02.021. Epub 2015 Mar 3.
Biochimie. 2015.
PMID: 25748164
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