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Potential to Enhance Large Scale Molecular Assessments of Skin Photoaging through Virtual Inference of Spatial Transcriptomics from Routine Staining.
Pac Symp Biocomput. 2024;29:477-491.
Pac Symp Biocomput. 2024.
PMID: 38160301
Free PMC article.
Spatial Omics Driven Crossmodal Pretraining Applied to Graph-based Deep Learning for Cancer Pathology Analysis.
Azher ZL, Fatemi M, Lu Y, Srinivasan G, Diallo AB, Christensen BC, Salas LA, Kolling FW, Perreard L, Palisoul SM, Vaickus LJ, Levy JJ.
Azher ZL, et al. Among authors: palisoul sm.
Pac Symp Biocomput. 2024;29:464-476.
Pac Symp Biocomput. 2024.
PMID: 38160300
Free PMC article.
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The Overlooked Role of Specimen Preparation in Bolstering Deep Learning-Enhanced Spatial Transcriptomics Workflows.
Fatemi MY, Lu Y, Diallo AB, Srinivasan G, Azher ZL, Christensen BC, Salas LA, Tsongalis GJ, Palisoul SM, Perreard L, Kolling FW, Vaickus LJ, Levy JJ.
Fatemi MY, et al. Among authors: palisoul sm.
medRxiv [Preprint]. 2023 Oct 9:2023.10.09.23296700. doi: 10.1101/2023.10.09.23296700.
medRxiv. 2023.
PMID: 37873287
Free PMC article.
Preprint.
Item in Clipboard
Feasibility of Inferring Spatial Transcriptomics from Single-Cell Histological Patterns for Studying Colon Cancer Tumor Heterogeneity.
Fatemi MY, Lu Y, Sharma C, Feng E, Azher ZL, Diallo AB, Srinivasan G, Rosner GM, Pointer KB, Christensen BC, Salas LA, Tsongalis GJ, Palisoul SM, Perreard L, Kolling FW, Vaickus LJ, Levy JJ.
Fatemi MY, et al. Among authors: palisoul sm.
medRxiv [Preprint]. 2023 Oct 9:2023.10.09.23296701. doi: 10.1101/2023.10.09.23296701.
medRxiv. 2023.
PMID: 37873186
Free PMC article.
Preprint.
Item in Clipboard
Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.
Fatemi M, Feng E, Sharma C, Azher Z, Goel T, Ramwala O, Palisoul SM, Barney RE, Perreard L, Kolling FW, Salas LA, Christensen BC, Tsongalis GJ, Vaickus LJ, Levy JJ.
Fatemi M, et al. Among authors: palisoul sm.
J Pathol Inform. 2023 Mar 29;14:100308. doi: 10.1016/j.jpi.2023.100308. eCollection 2023.
J Pathol Inform. 2023.
PMID: 37114077
Free PMC article.
Item in Clipboard
Identification of Spatial Proteomic Signatures of Colon Tumor Metastasis: A Digital Spatial Profiling Approach.
Levy JJ, Zavras JP, Veziroglu EM, Nasir-Moin M, Kolling FW, Christensen BC, Salas LA, Barney RE, Palisoul SM, Ren B, Liu X, Kerr DA, Pointer KB, Tsongalis GJ, Vaickus LJ.
Levy JJ, et al. Among authors: palisoul sm.
Am J Pathol. 2023 Jun;193(6):778-795. doi: 10.1016/j.ajpath.2023.02.020. Epub 2023 Apr 8.
Am J Pathol. 2023.
PMID: 37037284
Item in Clipboard
Mixed Effects Machine Learning Models for Colon Cancer Metastasis Prediction using Spatially Localized Immuno-Oncology Markers.
Levy JJ, Bobak CA, Nasir-Moin M, Veziroglu EM, Palisoul SM, Barney RE, Salas LA, Christensen BC, Tsongalis GJ, Vaickus LJ.
Levy JJ, et al. Among authors: palisoul sm.
Pac Symp Biocomput. 2022;27:175-186.
Pac Symp Biocomput. 2022.
PMID: 34890147
Free PMC article.
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Visualization and quantification of pancreatic tumor stroma in fresh tissue via ultraviolet surface excitation.
Vincent P, Bruza P, Palisoul SM, Gunn JR, Samkoe KS, Hoopes PJ, Hasan T, Pogue BW.
Vincent P, et al. Among authors: palisoul sm.
J Biomed Opt. 2021 Jan;26(1):016002. doi: 10.1117/1.JBO.26.1.016002.
J Biomed Opt. 2021.
PMID: 33423407
Free PMC article.
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