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From microbiome composition to functional engineering, one step at a time.
Burz SD, Causevic S, Dal Co A, Dmitrijeva M, Engel P, Garrido-Sanz D, Greub G, Hapfelmeier S, Hardt W-D, Hatzimanikatis V, Heiman CM, Herzog MK-M, Hockenberry A, Keel C, Keppler A, Lee S-J, Luneau J, Malfertheiner L, Mitri S, Ngyuen B, Oftadeh O, Pacheco AR, Peaudecerf F, Resch G, Ruscheweyh H-J, Sahin A, Sanders IR, Slack E, Sunagawa S, Tackmann J, Tecon R, Ugolini GS, Vacheron J, van der Meer JR, Vayena E, Vonaesch P, Vorholt JA. Burz SD, et al. Among authors: pacheco ar. Microbiol Mol Biol Rev. 2023 Dec 20;87(4):e0006323. doi: 10.1128/mmbr.00063-23. Epub 2023 Nov 10. Microbiol Mol Biol Rev. 2023. PMID: 37947420 Free article. Review.
Metabolic interaction models recapitulate leaf microbiota ecology.
Schäfer M, Pacheco AR, Künzler R, Bortfeld-Miller M, Field CM, Vayena E, Hatzimanikatis V, Vorholt JA. Schäfer M, et al. Among authors: pacheco ar. Science. 2023 Jul 7;381(6653):eadf5121. doi: 10.1126/science.adf5121. Epub 2023 Jul 7. Science. 2023. PMID: 37410834
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling.
Ankrah NYD, Bernstein DB, Biggs M, Carey M, Engevik M, García-Jiménez B, Lakshmanan M, Pacheco AR, Sulheim S, Medlock GL. Ankrah NYD, et al. Among authors: pacheco ar. mSystems. 2021 Dec 21;6(6):e0059921. doi: 10.1128/mSystems.00599-21. Epub 2021 Dec 14. mSystems. 2021. PMID: 34904863 Free PMC article.
Toward FAIR Representations of Microbial Interactions.
Pacheco AR, Pauvert C, Kishore D, Segrè D. Pacheco AR, et al. mSystems. 2022 Oct 26;7(5):e0065922. doi: 10.1128/msystems.00659-22. Epub 2022 Aug 25. mSystems. 2022. PMID: 36005399 Free PMC article.
42 results