Olson MA - Search Results

1

In silico derived small molecules bind the filovirus VP35 protein and inhibit its polymerase cofactor activity.

Brown CS, Lee MS, Leung DW, Wang T, Xu W, Luthra P, Anantpadma M, Shabman RS, Melito LM, MacMillan KS, Borek DM, Otwinowski Z, Ramanan P, Stubbs AJ, Peterson DS, Binning JM, Tonelli M, Olson MA, Davey RA, Ready JM, Basler CF, Amarasinghe GK. Brown CS, et al. Among authors: olson ma. J Mol Biol. 2014 May 15;426(10):2045-58. doi: 10.1016/j.jmb.2014.01.010. Epub 2014 Feb 1. J Mol Biol. 2014. PMID: 24495995 Free PMC article.

2

Fold prediction of VP24 protein of Ebola and Marburg viruses using de novo fragment assembly.

Lee MS, Lebeda FJ, Olson MA. Lee MS, et al. Among authors: olson ma. J Struct Biol. 2009 Aug;167(2):136-44. doi: 10.1016/j.jsb.2009.05.001. Epub 2009 May 15. J Struct Biol. 2009. PMID: 19447180

3

Application of replica exchange umbrella sampling to protein structure refinement of nontemplate models.

Olson MA, Lee MS. Olson MA, et al. J Comput Chem. 2013 Jul 30;34(20):1785-93. doi: 10.1002/jcc.23325. Epub 2013 May 23. J Comput Chem. 2013. PMID: 23703032

4

Calculation of absolute protein-ligand binding affinity using path and endpoint approaches.

Lee MS, Olson MA. Lee MS, et al. Among authors: olson ma. Biophys J. 2006 Feb 1;90(3):864-77. doi: 10.1529/biophysj.105.071589. Epub 2005 Nov 11. Biophys J. 2006. PMID: 16284269 Free PMC article.

5

Evaluation of Poisson solvation models using a hybrid explicit/implicit solvent method.

Lee MS, Olson MA. Lee MS, et al. Among authors: olson ma. J Phys Chem B. 2005 Mar 24;109(11):5223-36. doi: 10.1021/jp046377z. J Phys Chem B. 2005. PMID: 16863188

6

Calculation of absolute ligand binding free energy to a ribosome-targeting protein as a function of solvent model.

Lee MS, Olson MA. Lee MS, et al. Among authors: olson ma. J Phys Chem B. 2008 Oct 23;112(42):13411-7. doi: 10.1021/jp802460p. Epub 2008 Sep 27. J Phys Chem B. 2008. PMID: 18821791

7

Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.

Yeh IC, Lee MS, Olson MA. Yeh IC, et al. Among authors: olson ma. J Phys Chem B. 2008 Nov 27;112(47):15064-73. doi: 10.1021/jp802469g. J Phys Chem B. 2008. PMID: 18959439

8

Structure refinement of protein model decoys requires accurate side-chain placement.

Olson MA, Lee MS. Olson MA, et al. Proteins. 2013 Mar;81(3):469-78. doi: 10.1002/prot.24204. Epub 2012 Nov 12. Proteins. 2013. PMID: 23070940

9

Evaluation of unrestrained replica-exchange simulations using dynamic walkers in temperature space for protein structure refinement.

Olson MA, Lee MS. Olson MA, et al. PLoS One. 2014 May 21;9(5):e96638. doi: 10.1371/journal.pone.0096638. eCollection 2014. PLoS One. 2014. PMID: 24848767 Free PMC article.

10

Assessment of Detection and Refinement Strategies for de novo Protein Structures Using Force Field and Statistical Potentials.

Lee MS, Olson MA. Lee MS, et al. Among authors: olson ma. J Chem Theory Comput. 2007 Jan;3(1):312-24. doi: 10.1021/ct600195f. J Chem Theory Comput. 2007. PMID: 26627174

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