Ollila OHS - Search Results

1

Sharing Data from Molecular Simulations.

Abraham M, Apostolov R, Barnoud J, Bauer P, Blau C, Bonvin AMJJ, Chavent M, Chodera J, Čondić-Jurkić K, Delemotte L, Grubmüller H, Howard RJ, Jordan EJ, Lindahl E, Ollila OHS, Selent J, Smith DGA, Stansfeld PJ, Tiemann JKS, Trellet M, Woods C, Zhmurov A. Abraham M, et al. Among authors: ollila ohs. J Chem Inf Model. 2019 Oct 28;59(10):4093-4099. doi: 10.1021/acs.jcim.9b00665. Epub 2019 Oct 11. J Chem Inf Model. 2019. PMID: 31525920

2

3D pressure field in lipid membranes and membrane-protein complexes.

Ollila OH, Risselada HJ, Louhivuori M, Lindahl E, Vattulainen I, Marrink SJ. Ollila OH, et al. Phys Rev Lett. 2009 Feb 20;102(7):078101. doi: 10.1103/PhysRevLett.102.078101. Epub 2009 Feb 19. Phys Rev Lett. 2009. PMID: 19257715 Free article.

3

Using Open Data to Rapidly Benchmark Biomolecular Simulations: Phospholipid Conformational Dynamics.

Antila HS, M Ferreira T, Ollila OHS, Miettinen MS. Antila HS, et al. Among authors: ollila ohs. J Chem Inf Model. 2021 Feb 22;61(2):938-949. doi: 10.1021/acs.jcim.0c01299. Epub 2021 Jan 26. J Chem Inf Model. 2021. PMID: 33496579 Free PMC article.

4

Rotational Dynamics of Proteins from Spin Relaxation Times and Molecular Dynamics Simulations.

Ollila OHS, Heikkinen HA, Iwaï H. Ollila OHS, et al. J Phys Chem B. 2018 Jun 28;122(25):6559-6569. doi: 10.1021/acs.jpcb.8b02250. Epub 2018 Jun 14. J Phys Chem B. 2018. PMID: 29812937 Free PMC article.

5

Accurate Simulations of Lipid Monolayers Require a Water Model with Correct Surface Tension.

Tempra C, Ollila OHS, Javanainen M. Tempra C, et al. Among authors: ollila ohs. J Chem Theory Comput. 2022 Mar 8;18(3):1862-1869. doi: 10.1021/acs.jctc.1c00951. Epub 2022 Feb 8. J Chem Theory Comput. 2022. PMID: 35133839 Free PMC article.

6

Charged Small Molecule Binding to Membranes in MD Simulations Evaluated against NMR Experiments.

Nencini R, Ollila OHS. Nencini R, et al. Among authors: ollila ohs. J Phys Chem B. 2022 Sep 15;126(36):6955-6963. doi: 10.1021/acs.jpcb.2c05024. Epub 2022 Sep 5. J Phys Chem B. 2022. PMID: 36063117 Free PMC article.

7

Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studied with 1H-13C solid-state NMR and molecular dynamics simulations.

Ferreira TM, Topgaard D, Ollila OH. Ferreira TM, et al. Langmuir. 2014 Jan 21;30(2):461-9. doi: 10.1021/la404684r. Epub 2014 Jan 7. Langmuir. 2014. PMID: 24372090

8

Model-free estimation of the effective correlation time for C-H bond reorientation in amphiphilic bilayers: (1)H-(13)C solid-state NMR and MD simulations.

Ferreira TM, Ollila OH, Pigliapochi R, Dabkowska AP, Topgaard D. Ferreira TM, et al. J Chem Phys. 2015 Jan 28;142(4):044905. doi: 10.1063/1.4906274. J Chem Phys. 2015. PMID: 25638007

9

Atomistic resolution structure and dynamics of lipid bilayers in simulations and experiments.

Ollila OHS, Pabst G. Ollila OHS, et al. Biochim Biophys Acta. 2016 Oct;1858(10):2512-2528. doi: 10.1016/j.bbamem.2016.01.019. Epub 2016 Jan 22. Biochim Biophys Acta. 2016. PMID: 26809025 Free article. Review.

10

Molecular electrometer and binding of cations to phospholipid bilayers.

Catte A, Girych M, Javanainen M, Loison C, Melcr J, Miettinen MS, Monticelli L, Määttä J, Oganesyan VS, Ollila OH, Tynkkynen J, Vilov S. Catte A, et al. Phys Chem Chem Phys. 2016 Nov 30;18(47):32560-32569. doi: 10.1039/c6cp04883h. Phys Chem Chem Phys. 2016. PMID: 27874109

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