Ohler U - Search Results

1

SSMART: sequence-structure motif identification for RNA-binding proteins.

Munteanu A, Mukherjee N, Ohler U. Munteanu A, et al. Among authors: ohler u. Bioinformatics. 2018 Dec 1;34(23):3990-3998. doi: 10.1093/bioinformatics/bty404. Bioinformatics. 2018. PMID: 29893814 Free PMC article.

2

Informative priors based on transcription factor structural class improve de novo motif discovery.

Narlikar L, Gordân R, Ohler U, Hartemink AJ. Narlikar L, et al. Among authors: ohler u. Bioinformatics. 2006 Jul 15;22(14):e384-92. doi: 10.1093/bioinformatics/btl251. Bioinformatics. 2006. PMID: 16873497

3

A viral microRNA functions as an orthologue of cellular miR-155.

Gottwein E, Mukherjee N, Sachse C, Frenzel C, Majoros WH, Chi JT, Braich R, Manoharan M, Soutschek J, Ohler U, Cullen BR. Gottwein E, et al. Among authors: ohler u. Nature. 2007 Dec 13;450(7172):1096-9. doi: 10.1038/nature05992. Nature. 2007. PMID: 18075594 Free PMC article.

4

An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.

Arunachalam M, Jayasurya K, Tomancak P, Ohler U. Arunachalam M, et al. Among authors: ohler u. Bioinformatics. 2010 Sep 1;26(17):2109-15. doi: 10.1093/bioinformatics/btq358. Epub 2010 Jul 11. Bioinformatics. 2010. PMID: 20624780 Free PMC article.

5

Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.

Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, Hafner M, Ascano M Jr, Tuschl T, Ohler U, Keene JD. Mukherjee N, et al. Among authors: ohler u. Mol Cell. 2011 Aug 5;43(3):327-39. doi: 10.1016/j.molcel.2011.06.007. Epub 2011 Jun 30. Mol Cell. 2011. PMID: 21723170 Free PMC article.

6

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.

Corcoran DL, Georgiev S, Mukherjee N, Gottwein E, Skalsky RL, Keene JD, Ohler U. Corcoran DL, et al. Among authors: ohler u. Genome Biol. 2011 Aug 18;12(8):R79. doi: 10.1186/gb-2011-12-8-r79. Genome Biol. 2011. PMID: 21851591 Free PMC article.

7

Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines.

Gottwein E, Corcoran DL, Mukherjee N, Skalsky RL, Hafner M, Nusbaum JD, Shamulailatpam P, Love CL, Dave SS, Tuschl T, Ohler U, Cullen BR. Gottwein E, et al. Among authors: ohler u. Cell Host Microbe. 2011 Nov 17;10(5):515-26. doi: 10.1016/j.chom.2011.09.012. Cell Host Microbe. 2011. PMID: 22100165 Free PMC article.

8

FMRP targets distinct mRNA sequence elements to regulate protein expression.

Ascano M Jr, Mukherjee N, Bandaru P, Miller JB, Nusbaum JD, Corcoran DL, Langlois C, Munschauer M, Dewell S, Hafner M, Williams Z, Ohler U, Tuschl T. Ascano M Jr, et al. Among authors: ohler u. Nature. 2012 Dec 20;492(7429):382-6. doi: 10.1038/nature11737. Epub 2012 Dec 12. Nature. 2012. PMID: 23235829 Free PMC article.

9

MicroRNA target site identification by integrating sequence and binding information.

Majoros WH, Lekprasert P, Mukherjee N, Skalsky RL, Corcoran DL, Cullen BR, Ohler U. Majoros WH, et al. Among authors: ohler u. Nat Methods. 2013 Jul;10(7):630-3. doi: 10.1038/nmeth.2489. Epub 2013 May 26. Nat Methods. 2013. PMID: 23708386 Free PMC article.

10

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.

Li S, Liberman LM, Mukherjee N, Benfey PN, Ohler U. Li S, et al. Among authors: ohler u. Genome Res. 2013 Oct;23(10):1730-9. doi: 10.1101/gr.149310.112. Epub 2013 Jul 1. Genome Res. 2013. PMID: 23816784 Free PMC article.

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