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MEME SUITE: tools for motif discovery and searching.
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. Bailey TL, et al. Among authors: noble ws. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. doi: 10.1093/nar/gkp335. Epub 2009 May 20. Nucleic Acids Res. 2009. PMID: 19458158 Free PMC article.
Assessing computational tools for the discovery of transcription factor binding sites.
Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, Régnier M, Simonis N, Sinha S, Thijs G, van Helden J, Vandenbogaert M, Weng Z, Workman C, Ye C, Zhu Z. Tompa M, et al. Among authors: noble ws. Nat Biotechnol. 2005 Jan;23(1):137-44. doi: 10.1038/nbt1053. Nat Biotechnol. 2005. PMID: 15637633 Free article.
Quantifying similarity between motifs.
Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS. Gupta S, et al. Among authors: noble ws. Genome Biol. 2007;8(2):R24. doi: 10.1186/gb-2007-8-2-r24. Genome Biol. 2007. PMID: 17324271 Free PMC article.
FIMO: scanning for occurrences of a given motif.
Grant CE, Bailey TL, Noble WS. Grant CE, et al. Among authors: noble ws. Bioinformatics. 2011 Apr 1;27(7):1017-8. doi: 10.1093/bioinformatics/btr064. Epub 2011 Feb 16. Bioinformatics. 2011. PMID: 21330290 Free PMC article.
Improved similarity scores for comparing motifs.
Tanaka E, Bailey T, Grant CE, Noble WS, Keich U. Tanaka E, et al. Among authors: noble ws. Bioinformatics. 2011 Jun 15;27(12):1603-9. doi: 10.1093/bioinformatics/btr257. Epub 2011 May 4. Bioinformatics. 2011. PMID: 21543443 Free PMC article.
Epigenetic priors for identifying active transcription factor binding sites.
Cuellar-Partida G, Buske FA, McLeay RC, Whitington T, Noble WS, Bailey TL. Cuellar-Partida G, et al. Among authors: noble ws. Bioinformatics. 2012 Jan 1;28(1):56-62. doi: 10.1093/bioinformatics/btr614. Epub 2011 Nov 8. Bioinformatics. 2012. PMID: 22072382 Free PMC article.
303 results