Nishimura Y - Search Results

1

Nucleosome organization and chromatin dynamics in telomeres.

Ichikawa Y, Nishimura Y, Kurumizaka H, Shimizu M. Ichikawa Y, et al. Among authors: nishimura y. Biomol Concepts. 2015 Mar;6(1):67-75. doi: 10.1515/bmc-2014-0035. Biomol Concepts. 2015. PMID: 25720088 Free article. Review.

2

Telomeric repeats act as nucleosome-disfavouring sequences in vivo.

Ichikawa Y, Morohashi N, Nishimura Y, Kurumizaka H, Shimizu M. Ichikawa Y, et al. Among authors: nishimura y. Nucleic Acids Res. 2014 Feb;42(3):1541-52. doi: 10.1093/nar/gkt1006. Epub 2013 Oct 29. Nucleic Acids Res. 2014. PMID: 24174540 Free PMC article.

3

Acetylated histone H4 tail enhances histone H3 tail acetylation by altering their mutual dynamics in the nucleosome.

Furukawa A, Wakamori M, Arimura Y, Ohtomo H, Tsunaka Y, Kurumizaka H, Umehara T, Nishimura Y. Furukawa A, et al. Among authors: nishimura y. Proc Natl Acad Sci U S A. 2020 Aug 18;117(33):19661-19663. doi: 10.1073/pnas.2010506117. Epub 2020 Aug 3. Proc Natl Acad Sci U S A. 2020. PMID: 32747537 Free PMC article.

4

The N-terminal Tails of Histones H2A and H2B Adopt Two Distinct Conformations in the Nucleosome with Contact and Reduced Contact to DNA.

Ohtomo H, Kurita JI, Sakuraba S, Li Z, Arimura Y, Wakamori M, Tsunaka Y, Umehara T, Kurumizaka H, Kono H, Nishimura Y. Ohtomo H, et al. Among authors: nishimura y. J Mol Biol. 2021 Jul 23;433(15):167110. doi: 10.1016/j.jmb.2021.167110. Epub 2021 Jun 18. J Mol Biol. 2021. PMID: 34153285 Free article.

5

N-terminal phosphorylation of HP1α increases its nucleosome-binding specificity.

Nishibuchi G, Machida S, Osakabe A, Murakoshi H, Hiragami-Hamada K, Nakagawa R, Fischle W, Nishimura Y, Kurumizaka H, Tagami H, Nakayama J. Nishibuchi G, et al. Among authors: nishimura y. Nucleic Acids Res. 2014 Nov 10;42(20):12498-511. doi: 10.1093/nar/gku995. Epub 2014 Oct 20. Nucleic Acids Res. 2014. PMID: 25332400 Free PMC article.

6

Gas-phase structure of the histone multimers characterized by ion mobility mass spectrometry and molecular dynamics simulation.

Saikusa K, Fuchigami S, Takahashi K, Asano Y, Nagadoi A, Tachiwana H, Kurumizaka H, Ikeguchi M, Nishimura Y, Akashi S. Saikusa K, et al. Among authors: nishimura y. Anal Chem. 2013 Apr 16;85(8):4165-71. doi: 10.1021/ac400395j. Epub 2013 Mar 29. Anal Chem. 2013. PMID: 23485128

7

Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.

Kato D, Osakabe A, Arimura Y, Mizukami Y, Horikoshi N, Saikusa K, Akashi S, Nishimura Y, Park SY, Nogami J, Maehara K, Ohkawa Y, Matsumoto A, Kono H, Inoue R, Sugiyama M, Kurumizaka H. Kato D, et al. Among authors: nishimura y. Science. 2017 Apr 14;356(6334):205-208. doi: 10.1126/science.aak9867. Science. 2017. PMID: 28408607

8

Structural Diversity of Nucleosomes Characterized by Native Mass Spectrometry.

Saikusa K, Osakabe A, Kato D, Fuchigami S, Nagadoi A, Nishimura Y, Kurumizaka H, Akashi S. Saikusa K, et al. Among authors: nishimura y. Anal Chem. 2018 Jul 3;90(13):8217-8226. doi: 10.1021/acs.analchem.8b01649. Epub 2018 Jun 12. Anal Chem. 2018. PMID: 29860831

9

Conclusive evidence of the reconstituted hexasome proven by native mass spectrometry.

Azegami N, Saikusa K, Todokoro Y, Nagadoi A, Kurumizaka H, Nishimura Y, Akashi S. Azegami N, et al. Among authors: nishimura y. Biochemistry. 2013 Aug 6;52(31):5155-7. doi: 10.1021/bi4005655. Epub 2013 Jul 24. Biochemistry. 2013. PMID: 23879667

10

C-terminal acidic domain of histone chaperone human NAP1 is an efficient binding assistant for histone H2A-H2B, but not H3-H4.

Ohtomo H, Akashi S, Moriwaki Y, Okuwaki M, Osakabe A, Nagata K, Kurumizaka H, Nishimura Y. Ohtomo H, et al. Among authors: nishimura y. Genes Cells. 2016 Mar;21(3):252-63. doi: 10.1111/gtc.12339. Epub 2016 Feb 4. Genes Cells. 2016. PMID: 26841755 Free article.

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