Nip KM - Search Results

1

Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage.

Lin D, Sutherland D, Aninta SI, Louie N, Nip KM, Li C, Yanai A, Coombe L, Warren RL, Helbing CC, Hoang LMN, Birol I. Lin D, et al. Among authors: nip km. Antibiotics (Basel). 2022 Jul 15;11(7):952. doi: 10.3390/antibiotics11070952. Antibiotics (Basel). 2022. PMID: 35884206 Free PMC article.

2

Complete genomic landscape of a recurring sporadic parathyroid carcinoma.

Kasaian K, Wiseman SM, Thiessen N, Mungall KL, Corbett RD, Qian JQ, Nip KM, He A, Tse K, Chuah E, Varhol RJ, Pandoh P, McDonald H, Zeng T, Tam A, Schein J, Birol I, Mungall AJ, Moore RA, Zhao Y, Hirst M, Marra MA, Walker BA, Jones SJ. Kasaian K, et al. Among authors: nip km. J Pathol. 2013 Jul;230(3):249-60. doi: 10.1002/path.4203. J Pathol. 2013. PMID: 23616356

3

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.

Swanson L, Robertson G, Mungall KL, Butterfield YS, Chiu R, Corbett RD, Docking TR, Hogge D, Jackman SD, Moore RA, Mungall AJ, Nip KM, Parker JD, Qian JQ, Raymond A, Sung S, Tam A, Thiessen N, Varhol R, Wang S, Yorukoglu D, Zhao Y, Hoodless PA, Sahinalp SC, Karsan A, Birol I. Swanson L, et al. Among authors: nip km. BMC Genomics. 2013 Aug 14;14:550. doi: 10.1186/1471-2164-14-550. BMC Genomics. 2013. PMID: 23941359 Free PMC article.

4

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

Chu J, Sadeghi S, Raymond A, Jackman SD, Nip KM, Mar R, Mohamadi H, Butterfield YS, Robertson AG, Birol I. Chu J, et al. Among authors: nip km. Bioinformatics. 2014 Dec 1;30(23):3402-4. doi: 10.1093/bioinformatics/btu558. Epub 2014 Aug 20. Bioinformatics. 2014. PMID: 25143290 Free PMC article.

5

Kleat: cleavage site analysis of transcriptomes.

Birol I, Raymond A, Chiu R, Nip KM, Jackman SD, Kreitzman M, Docking TR, Ennis CA, Robertson AG, Karsan A. Birol I, et al. Among authors: nip km. Pac Symp Biocomput. 2015:347-58. Pac Symp Biocomput. 2015. PMID: 25592595 Free PMC article.

6

Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes.

Xue Z, Warren RL, Gibb EA, MacMillan D, Wong J, Chiu R, Hammond SA, Yang C, Nip KM, Ennis CA, Hahn A, Reynolds S, Birol I. Xue Z, et al. Among authors: nip km. BMC Genomics. 2018 Jul 13;19(1):536. doi: 10.1186/s12864-018-4903-7. BMC Genomics. 2018. PMID: 30005633 Free PMC article.

7

TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.

Chiu R, Nip KM, Chu J, Birol I. Chiu R, et al. Among authors: nip km. BMC Med Genomics. 2018 Sep 10;11(1):79. doi: 10.1186/s12920-018-0402-6. BMC Med Genomics. 2018. PMID: 30200994 Free PMC article.

8

Fusion-Bloom: fusion detection in assembled transcriptomes.

Chiu R, Nip KM, Birol I. Chiu R, et al. Among authors: nip km. Bioinformatics. 2020 Apr 1;36(7):2256-2257. doi: 10.1093/bioinformatics/btz902. Bioinformatics. 2020. PMID: 31790154 Free PMC article.

9

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data.

Hafezqorani S, Yang C, Lo T, Nip KM, Warren RL, Birol I. Hafezqorani S, et al. Among authors: nip km. Gigascience. 2020 Jun 1;9(6):giaa061. doi: 10.1093/gigascience/giaa061. Gigascience. 2020. PMID: 32520350 Free PMC article.

10

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes.

Nip KM, Chiu R, Yang C, Chu J, Mohamadi H, Warren RL, Birol I. Nip KM, et al. Genome Res. 2020 Aug;30(8):1191-1200. doi: 10.1101/gr.260174.119. Epub 2020 Aug 17. Genome Res. 2020. PMID: 32817073 Free PMC article.

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