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Cell-type specialization is encoded by specific chromatin topologies.
Winick-Ng W, Kukalev A, Harabula I, Zea-Redondo L, Szabó D, Meijer M, Serebreni L, Zhang Y, Bianco S, Chiariello AM, Irastorza-Azcarate I, Thieme CJ, Sparks TM, Carvalho S, Fiorillo L, Musella F, Irani E, Torlai Triglia E, Kolodziejczyk AA, Abentung A, Apostolova G, Paul EJ, Franke V, Kempfer R, Akalin A, Teichmann SA, Dechant G, Ungless MA, Nicodemi M, Welch L, Castelo-Branco G, Pombo A. Winick-Ng W, et al. Among authors: nicodemi m. Nature. 2021 Nov;599(7886):684-691. doi: 10.1038/s41586-021-04081-2. Epub 2021 Nov 17. Nature. 2021. PMID: 34789882 Free PMC article.
A model of the large-scale organization of chromatin.
Barbieri M, Chotalia M, Fraser J, Lavitas LM, Dostie J, Pombo A, Nicodemi M. Barbieri M, et al. Among authors: nicodemi m. Biochem Soc Trans. 2013 Apr;41(2):508-12. doi: 10.1042/BST20120238. Biochem Soc Trans. 2013. PMID: 23514144 Review.
Polymer models of chromatin organization.
Barbieri M, Scialdone A, Piccolo A, Chiariello AM, di Lanno C, Prisco A, Pombo A, Nicodemi M. Barbieri M, et al. Among authors: nicodemi m. Front Genet. 2013 Jun 20;4:113. doi: 10.3389/fgene.2013.00113. eCollection 2013. Front Genet. 2013. PMID: 23802011 Free PMC article. No abstract available.
Models of chromosome structure.
Nicodemi M, Pombo A. Nicodemi M, et al. Curr Opin Cell Biol. 2014 Jun;28:90-5. doi: 10.1016/j.ceb.2014.04.004. Epub 2014 May 4. Curr Opin Cell Biol. 2014. PMID: 24804566 Free article. Review.
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.
Fraser J, Ferrai C, Chiariello AM, Schueler M, Rito T, Laudanno G, Barbieri M, Moore BL, Kraemer DC, Aitken S, Xie SQ, Morris KJ, Itoh M, Kawaji H, Jaeger I, Hayashizaki Y, Carninci P, Forrest AR; FANTOM Consortium; Semple CA, Dostie J, Pombo A, Nicodemi M. Fraser J, et al. Among authors: nicodemi m. Mol Syst Biol. 2015 Dec 23;11(12):852. doi: 10.15252/msb.20156492. Mol Syst Biol. 2015. PMID: 26700852 Free PMC article.
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation.
Proserpio V, Piccolo A, Haim-Vilmovsky L, Kar G, Lönnberg T, Svensson V, Pramanik J, Natarajan KN, Zhai W, Zhang X, Donati G, Kayikci M, Kotar J, McKenzie AN, Montandon R, Billker O, Woodhouse S, Cicuta P, Nicodemi M, Teichmann SA. Proserpio V, et al. Among authors: nicodemi m. Genome Biol. 2016 May 12;17:103. doi: 10.1186/s13059-016-0957-5. Genome Biol. 2016. PMID: 27176874 Free PMC article.
Polymer physics of chromosome large-scale 3D organisation.
Chiariello AM, Annunziatella C, Bianco S, Esposito A, Nicodemi M. Chiariello AM, et al. Among authors: nicodemi m. Sci Rep. 2016 Jul 13;6:29775. doi: 10.1038/srep29775. Sci Rep. 2016. PMID: 27405443 Free PMC article.
102 results