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OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS.
Mol Cell Proteomics. 2020 Dec;19(12):2157-2168. doi: 10.1074/mcp.TIR120.002186. Epub 2020 Oct 16.
Mol Cell Proteomics. 2020.
PMID: 33067342
Free PMC article.
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics.
Vizcaíno JA, Mayer G, Perkins S, Barsnes H, Vaudel M, Perez-Riverol Y, Ternent T, Uszkoreit J, Eisenacher M, Fischer L, Rappsilber J, Netz E, Walzer M, Kohlbacher O, Leitner A, Chalkley RJ, Ghali F, Martínez-Bartolomé S, Deutsch EW, Jones AR.
Vizcaíno JA, et al. Among authors: netz e.
Mol Cell Proteomics. 2017 Jul;16(7):1275-1285. doi: 10.1074/mcp.M117.068429. Epub 2017 May 17.
Mol Cell Proteomics. 2017.
PMID: 28515314
Free PMC article.
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Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.
Leitner A, Bonvin AMJJ, Borchers CH, Chalkley RJ, Chamot-Rooke J, Combe CW, Cox J, Dong MQ, Fischer L, Götze M, Gozzo FC, Heck AJR, Hoopmann MR, Huang L, Ishihama Y, Jones AR, Kalisman N, Kohlbacher O, Mechtler K, Moritz RL, Netz E, Novak P, Petrotchenko E, Sali A, Scheltema RA, Schmidt C, Schriemer D, Sinz A, Sobott F, Stengel F, Thalassinos K, Urlaub H, Viner R, Vizcaíno JA, Wilkins MR, Rappsilber J.
Leitner A, et al. Among authors: netz e.
Structure. 2020 Nov 3;28(11):1259-1268. doi: 10.1016/j.str.2020.09.011. Epub 2020 Oct 15.
Structure. 2020.
PMID: 33065067
Free article.
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OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data.
Pfeuffer J, Bielow C, Wein S, Jeong K, Netz E, Walter A, Alka O, Nilse L, Colaianni PD, McCloskey D, Kim J, Rosenberger G, Bichmann L, Walzer M, Veit J, Boudaud B, Bernt M, Patikas N, Pilz M, Startek MP, Kutuzova S, Heumos L, Charkow J, Sing JC, Feroz A, Siraj A, Weisser H, Dijkstra TMH, Perez-Riverol Y, Röst H, Kohlbacher O, Sachsenberg T.
Pfeuffer J, et al. Among authors: netz e.
Nat Methods. 2024 Mar;21(3):365-367. doi: 10.1038/s41592-024-02197-7.
Nat Methods. 2024.
PMID: 38366242
No abstract available.
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CLAUDIO: automated structural analysis of cross-linking data.
Röhl A, Netz E, Kohlbacher O, Elhabashy H.
Röhl A, et al. Among authors: netz e.
Bioinformatics. 2024 Mar 29;40(4):btae146. doi: 10.1093/bioinformatics/btae146.
Bioinformatics. 2024.
PMID: 38498849
Free PMC article.
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The Phosphodiesterase Inhibitor IBMX Blocks the Potassium Channel THIK-1 from the Extracellular Side.
Zou X, Conrad LJ, Koschinsky K, Schlichthörl G, Preisig-Müller R, Netz E, Krüger J, Daut J, Renigunta V.
Zou X, et al. Among authors: netz e.
Mol Pharmacol. 2020 Aug;98(2):143-155. doi: 10.1124/molpharm.120.000011.
Mol Pharmacol. 2020.
PMID: 32616523
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JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Rodriguez N, Thomas A, Watanabe L, Vazirabad IY, Kofia V, Gómez HF, Mittag F, Matthes J, Rudolph J, Wrzodek F, Netz E, Diamantikos A, Eichner J, Keller R, Wrzodek C, Fröhlich S, Lewis NE, Myers CJ, Le Novère N, Palsson BØ, Hucka M, Dräger A.
Rodriguez N, et al. Among authors: netz e.
Bioinformatics. 2015 Oct 15;31(20):3383-6. doi: 10.1093/bioinformatics/btv341. Epub 2015 Jun 16.
Bioinformatics. 2015.
PMID: 26079347
Free PMC article.
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[A brief guide to designing research proposals].
Geitgey D, Netz E.
Geitgey D, et al. Among authors: netz e.
Turk Hemsire Derg. 1983;33(1):15-21.
Turk Hemsire Derg. 1983.
PMID: 6563819
Turkish.
No abstract available.
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